Update citation

Author: ahmig

CITATION.cff

@@ -0,0 +1,45 @@
+cff-version: 1.2.0
+message: "This pipeline was developed as part of a larger study. If you use this software, please cite it as below."
+authors:
+  - family-names: "Álvarez-Herrera"
+    given-names: "Miguel"
+    orcid: "https://orcid.org/0000-0002-7922-3180"
+title: "tcfinder"
+version: 1.0.0
+date-released: 2024-06-14
+url: "https://github.com/PathoGenOmics-Lab/tcfinder"
+preferred-citation:
+  type: article
+  authors:
+  - family-names: "Álvarez-Herrera"
+    given-names: "Miguel"
+  - family-names: "Ruiz-Rodriguez"
+    given-names: "Paula"
+  - family-names: "Navarro-Domínguez"
+    given-names: "Beatriz"
+  - family-names: "Zulaica"
+    given-names: "Joao"
+  - family-names: "Grau"
+    given-names: "Brayan"
+  - family-names: "Bracho"
+    given-names: "María Alma"
+  - family-names: "Guerreiro"
+    given-names: "Manuel"
+  - family-names: "Aguilar-Gallardo"
+    given-names: "Cristóbal"
+  - family-names: "González-Candelas"
+    given-names: "Fernando"
+  - family-names: "Comas"
+    given-names: "Iñaki"
+  - family-names: "Geller"
+    given-names: "Ron"
+  - family-names: "Coscollá"
+    given-names: "Mireia"
+  doi: "10.1093/ve/veaf015"
+  journal: "Virus Evolution"
+  month: 3
+  pages: veaf015
+  title: "Genome data artifacts and functional studies of deletion repair in the BA.1 SARS-CoV-2 spike protein"
+  issue: 1
+  volume: 11
+  year: 2025

README.md

@@ -97,8 +97,10 @@ qualifies under the default thresholds (✓), while the second does not (✗).
 
 ![cluster stats scheme](/scheme.png)
 
-<!-- ## Citation -->
+## Citation
 
-<!-- Manuscript under review. -->
+This tool was originally developed to support this work:
 
-<!-- TODO: https://allcontributors.org/ -->
+> Álvarez-Herrera M, Ruiz-Rodriguez P, Navarro-Domínguez B, Zulaica J, Grau B, Bracho MA, Guerreiro M, Aguilar-Gallardo C, González-Candelas F, Comas I, Geller R & Coscollá M (2025). Genome data artifacts and functional studies of deletion repair in the BA.1 SARS-CoV-2 spike protein. Virus Evolution, 11(1), veaf015. https://doi.org/10.1093/ve/veaf015
+
+If you find the tool helpful, please feel free to cite the above (see also [CITATION.cff](/CITATION.cff)).