Updated to use new java, gradle, sifgraph, github workflow.

Author: IgorRodchenkov

.github/workflows/gradle.yml

@@ -0,0 +1,52 @@
+name: gradle
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+#    env:
+#      _JAVA_OPTIONS: "--add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.lang.reflect=ALL-UNNAMED"
+
+    name: Build with Gradle
+    
+    strategy:
+      fail-fast: false
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up JDK
+        uses: actions/setup-java@v2
+        with:
+          java-version: 17
+          distribution: 'temurin'
+          cache: gradle
+      - name: Build with Gradle
+        run: |
+          ./gradlew build
+          find . -name '*.jar'
+      - name: Cleanup Gradle Cache
+        # Remove some files from the Gradle cache, so they aren't cached by GitHub Actions.
+        # Restoring these files from a GitHub Actions cache might cause problems for future builds.
+        run: |
+          rm -f ~/.gradle/caches/modules-2/modules-2.lock
+          rm -f ~/.gradle/caches/modules-2/gc.properties
+      - name: Move Artifacts
+        run: |
+          pwd
+          find . -name 'sifgraph-server*.jar' -exec bash -c 'mv $0 ./sifgraph-server.jar' {} \;
+          ls
+      - name: Release
+        uses: softprops/action-gh-release@v1
+        with: 
+          name: 'latest'
+          tag_name: 'latest'
+          prerelease: true
+          files: sifgraph-server.jar

.travis.yml

@@ -1,4 +1,4 @@
-FROM openjdk:13-jdk-alpine
+FROM openjdk:17
 VOLUME /tmp
 ARG JAR_FILE="build/libs/sifgraph-server*.jar"
 ARG DATA_FILE="data.txt.gz"

Dockerfile

@@ -1,7 +1,6 @@
 # Pathway Commons SIF Graph Query Server
 
-[![Build Status](https://travis-ci.org/PathwayCommons/sifgraph-server.svg?branch=master)](https://travis-ci.org/PathwayCommons/sifgraph-server) 
-[![Codacy Badge](https://api.codacy.com/project/badge/Grade/edad8a3d679c4d99b608440dc6d397a8)](https://www.codacy.com/app/IgorRodchenkov/sifgraph-server?utm_source=github.com&utm_medium=referral&utm_content=PathwayCommons/sifgraph-server&utm_campaign=Badge_Grade)
+![Build](https://github.com/PathwayCommons/sifgraph-server/actions/workflows/gradle.yml/badge.svg?branch=master)
 
 A Spring Boot RESTful web service built around [sifgraph](https://github.com/PathwayCommons/sifgraph) 
 java library that executes _neighborhood_, _pathsbetween_, etc., graph queries 

README.md

@@ -25,7 +25,7 @@ repositories {
 }
 
 dependencies {
-    implementation 'pathwaycommons.sif:sifgraph:1.0.0-SNAPSHOT'
+    implementation 'pathwaycommons.sif:sifgraph:1.1.0-SNAPSHOT'
 
     implementation 'org.springframework.boot:spring-boot-starter-actuator'
     implementation 'org.springframework.boot:spring-boot-starter-web'
@@ -43,7 +43,6 @@ dependencies {
     implementation 'javax.activation:activation:1.1.1'
 }
 
-sourceCompatibility = 1.8
+sourceCompatibility = 8
 group = 'pathwaycommons'
-version =  '0.3.1'
-
+version =  '0.4.0'

build.gradle

@@ -1,5 +1,5 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-6.3-all.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-7.5.1-all.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists