Filter which series types we support when tagging datasets

Author: arteymix

gemma-core/src/main/java/ubic/gemma/core/loader/expression/geo/GeoConverterImpl.java

@@ -65,6 +65,7 @@
 
 import static java.util.Objects.requireNonNull;
 import static ubic.gemma.core.loader.expression.geo.model.GeoSeriesType.EXPRESSION_PROFILING_BY_ARRAY;
+import static ubic.gemma.core.loader.expression.geo.model.GeoSeriesType.EXPRESSION_PROFILING_BY_HIGH_THROUGHPUT_SEQUENCING;
 import static ubic.gemma.core.ontology.ValueStringToOntologyMapping.lookup;
 
 /**
@@ -1970,6 +1971,7 @@ private ExpressionExperiment convertSeriesSingle( GeoSeries series ) {
      */
     private void convertSeriesTypes( GeoSeries series, ExpressionExperiment expExp ) {
         Set<Characteristic> assayTypes = series.getSeriesTypes().stream()
+                .filter( this::isSeriesTypeSupported )
                 .map( st -> convertSeriesType( series, st ) )
                 .filter( Objects::nonNull )
                 .collect( Collectors.toSet() );
@@ -1982,6 +1984,14 @@ private void convertSeriesTypes( GeoSeries series, ExpressionExperiment expExp )
         }
     }
 
+    /**
+     * Indicate if we support loading data for the given GEO series type.
+     */
+    private boolean isSeriesTypeSupported( GeoSeriesType geoSeriesType ) {
+        return geoSeriesType == EXPRESSION_PROFILING_BY_ARRAY
+                || geoSeriesType == EXPRESSION_PROFILING_BY_HIGH_THROUGHPUT_SEQUENCING;
+    }
+
     /**
      * Detect the most specific assay type that we can.
      */