minor fixes

Author: oganm

gemmapy/sdk/models/annotation_value_object.py

@@ -195,7 +195,7 @@ def evidence_code(self, evidence_code):
         :param evidence_code: The evidence_code of this AnnotationValueObject.  # noqa: E501
         :type: str
         """
-        allowed_values = ["IC", "IDA", "IEA", "IEP", "IGI", "IMP", "IPI", "ISS", "NAS", "ND", "RCA", "TAS", "NR", "EXP", "ISA", "ISM", "IGC", "ISO", "IIA", "IBA", "IBD", "IKR", "IRD", "IMR", "IED", "IAGP", "IPM", "QTM", "HDA", "HEP", "HGI", "HMP", "HTP", "OTHER"]  # noqa: E501
+        allowed_values = ["", "IC", "IDA", "IEA", "IEP", "IGI", "IMP", "IPI", "ISS", "NAS", "ND", "RCA", "TAS", "NR", "EXP", "ISA", "ISM", "IGC", "ISO", "IIA", "IBA", "IBD", "IKR", "IRD", "IMR", "IED", "IAGP", "IPM", "QTM", "HDA", "HEP", "HGI", "HMP", "HTP", "OTHER"]  # noqa: E501
         if evidence_code not in allowed_values:
             raise ValueError(
                 "Invalid value for `evidence_code` ({0}), must be one of {1}"  # noqa: E501

sdk-gen/openapi.yaml

@@ -6859,6 +6859,7 @@ components:
         evidenceCode:
           type: string
           enum:
+          - ~
           - IC
           - IDA
           - IEA
@@ -7894,6 +7895,7 @@ components:
         evidenceCode:
           type: string
           enum:
+          - ~
           - IC
           - IDA
           - IEA

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = gemmapy
-version = 2.0.0
+version = 2.0.1
 description = a Python Wrapper for the Gemma API
 long_description = file: README.rst
 keywords = gemma, bioinformatics

tests/test_basic.py

@@ -55,10 +55,6 @@ def test_get_dataset_annotations():
     assert type(res) is pd.core.frame.DataFrame
     assert res.shape[1] == 5
 
-def test_get_dataset_design():
-    res = api._GemmaPy__get_dataset_design('1')
-    assert type(res) is pd.core.frame.DataFrame
-
 def test_get_dataset_differential_expression_analyses():
     res = api.get_dataset_differential_expression_analyses(200)
     assert type(res) is pd.core.frame.DataFrame
@@ -126,4 +122,9 @@ def test_get_dataset_object():
                            contrasts = dea.contrast_ID,output_type='dict')
 
     assert len(obj) == dea.shape[0]
-    
+
+
+# def test_measurements():
+#    dataset = "GSE106"
+#    samples = api.get_dataset_samples(dataset)
+