Initial migration of BETYdb to R package #12

Merged

dlebauer merged 68 commits intomainfrom

Apr 9, 2026

Commits on Feb 11, 2026

Commits on Feb 21, 2026

clarify citation

dlebauer
and
Copilot
authored

Commits on Mar 2, 2026

update build and git ignore rules
divine7022
committed
switch vignette builder to quarto
divine7022
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update license copyright holder
divine7022
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update package and dataset documentation
divine7022
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rewrite readme with current table structure
divine7022
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drop access_level column and reorder traitsview columns
divine7022
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rebuild data with updated column order
divine7022
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regenerate datapackage.json with all table schemas
divine7022
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update generated man pages
divine7022
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update tests for new column layout
divine7022
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remove old Rmd vignettes
divine7022
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add quarto vignettes
divine7022
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vignettes/*_files/ to root
divine7022
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add quarto website config and homepage
divine7022
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add gh-pages deploy workflow
divine7022
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Merge branch 'mvp-betydata' of github.com:PecanProject/betydata into mvp-betydata
divine7022
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R-CMD-check workflow doesn't install quarto cli. It only installs pandoc. The quarto R package needs the quarto cli to render .qmd vignettes. So add a quarto-dev/quarto-actions/setup@v2 step
divine7022
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individual vignette rendering, output in-place next to .qmd
divine7022
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fix know quarto-dev upstream bug #217 on windows; added local::. to pre-install the package into the standard library before R CMD check runs
divine7022
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added a hidden setup chunk at the top; this makes vignettes gracefully skip code execution if the package is unavailable (e.g. someone running R CMD check locally without quarto's library path fix)…
divine7022
committed

Commits on Mar 7, 2026