fix(pipeline): correct conda environment name

ilypopv · ilypopv · commit 700e1d1700c5 · 2026-05-20T15:01:33.000+02:00
diff --git a/04_Densoviruses/GA_pipeline b/04_Densoviruses/GA_pipeline
@@ -14,7 +14,7 @@ rule run_prokka:
         24
     output:
         directory("prokka_results/annotated_densovirus_{sample}")
-    conda: "denso.yaml"
+    conda: "denso"
     shell:
         """
         prokka --kingdom Viruses --outdir {output} --proteins {input.proteins} --addgenes --prefix {params.prefix} {input.genome} --cpus {threads}

Original file line number	Diff line number	Diff line change
`@@ -14,7 +14,7 @@ rule run_prokka:`
`14`	`14`	`24`
`15`	`15`	`output:`
`16`	`16`	`directory("prokka_results/annotated_densovirus_{sample}")`
`17`		`- conda: "denso.yaml"`
	`17`	`+ conda: "denso"`
`18`	`18`	`shell:`
`19`	`19`	`"""`
`20`	`20`	`prokka --kingdom Viruses --outdir {output} --proteins {input.proteins} --addgenes --prefix {params.prefix} {input.genome} --cpus {threads}`