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- Stacked Bar Plots: Utilizing `matplotlib` [@Hunter2007] and `pandas` [@reback2020pandas], `KrakenParser` can generate stacked bar plots that display the relative abundances of taxa across multiple samples. These plots provide a clear comparison of taxonomic compositions between samples.
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- Streamgraphs: For a more dynamic representation, `KrakenParser` can create streamgraphs using `matplotlib`’s [@Hunter2007] stackplot function with a symmetric baseline. This visualization emphasizes changes in taxa abundances over a series of samples, highlighting temporal or sequential patterns. 
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- Combined Visualizations: To offer both detailed and overarching views, `KrakenParser` supports combined plots that integrate stacked bar plots and streamgraphs. This dual representation aids in comprehensive data analysis.
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- Clustermaps: Employing `seaborn` [@Waskom2021], KrakenParser can produce clustermaps that perform hierarchical clustering on taxa and samples. These heatmaps reveal patterns and groupings in the data, facilitating the identification of similar taxonomic profiles.
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- Clustermaps: Employing `seaborn` [@Waskom2021], `KrakenParser` can produce clustermaps that perform hierarchical clustering on taxa and samples. These heatmaps reveal patterns and groupings in the data, facilitating the identification of similar taxonomic profiles.
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These visualization tools are accessible through the `KrakenParser` Python API, allowing users to customize and integrate them into their analysis workflows seamlessly.
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