You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: paper/paper.md
+1-1Lines changed: 1 addition & 1 deletion
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -44,7 +44,7 @@ Each of these steps is exposed as a sub-command in the CLI, so advanced users ca
44
44
- Stacked Bar Plots: Utilizing `matplotlib`[@Hunter2007] and `pandas`[@reback2020pandas], `KrakenParser` can generate stacked bar plots that display the relative abundances of taxa across multiple samples. These plots provide a clear comparison of taxonomic compositions between samples.
45
45
- Streamgraphs: For a more dynamic representation, `KrakenParser` can create streamgraphs using `matplotlib`’s [@Hunter2007] stackplot function with a symmetric baseline. This visualization emphasizes changes in taxa abundances over a series of samples, highlighting temporal or sequential patterns. 
46
46
- Combined Visualizations: To offer both detailed and overarching views, `KrakenParser` supports combined plots that integrate stacked bar plots and streamgraphs. This dual representation aids in comprehensive data analysis.
47
-
- Clustermaps: Employing `seaborn`[@Waskom2021], KrakenParser can produce clustermaps that perform hierarchical clustering on taxa and samples. These heatmaps reveal patterns and groupings in the data, facilitating the identification of similar taxonomic profiles.
47
+
- Clustermaps: Employing `seaborn`[@Waskom2021], `KrakenParser` can produce clustermaps that perform hierarchical clustering on taxa and samples. These heatmaps reveal patterns and groupings in the data, facilitating the identification of similar taxonomic profiles.
48
48
49
49
These visualization tools are accessible through the `KrakenParser` Python API, allowing users to customize and integrate them into their analysis workflows seamlessly.
0 commit comments