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PopovIILab / KrakenParser Public

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Refactor package CLI to native Typer subcommands and update metadata to v1.1.0#19

Merged

ilypopv merged 13 commits into

mainPopovIILab/KrakenParser:mainfrom

devPopovIILab/KrakenParser:devCopy head branch name to clipboard

Jun 1, 2026

Conversation Commits13 (13)Checks Files changed

Merged

Refactor package CLI to native Typer subcommands and update metadata to v1.1.0#19
ilypopv merged 13 commits into
mainfrom
dev

Commits

Commits on Jun 1, 2026

feat(mpa): migrate CLI from argparse to typer
ilypopv
committed
feat(counts): migrate convert2csv CLI from argparse to typer
ilypopv
committed
feat(counts): migrate processing_script CLI from argparse to typer
ilypopv
committed
feat(counts): migrate split_mpa to typer and add domain filtering options
ilypopv
committed
feat(mpa): migrate transform2mpa CLI to typer and update path typing
ilypopv
committed
feat(stats): migrate diversity CLI from argparse to typer
ilypopv
committed
feat(stats): migrate relabund CLI from argparse to typer
ilypopv
committed
feat(pipeline): migrate main entrypoint to typer and expose domain filters
ilypopv
committed
feat(cli): refactor core entrypoint to native Typer subcommands
ilypopv
committed
chore(release): bump version to 1.1.0 and register Typer entry points
ilypopv
committed
docs(readme): polish structure and styling
ilypopv
committed
test(cli): update test suites to reflect modern typer subcommand syntax
ilypopv
committed
chore: remove obsolete comments from scripts
ilypopv
committed

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