Update requirements.txt and toml for dependency fix

Author: gourav3017

portpy/photon/utils/download_portpy_data.py

@@ -39,7 +39,6 @@
     )
     snapshot_download = None
     hf_hub_download = None
-    # ignore missing imports
 
 
 REPO_DEFAULT = "PortPy-Project/PortPy_Dataset"

pyproject.toml

@@ -16,7 +16,7 @@ authors = [
     { name = "Saad Nadeem", email = "nadeems@mskcc.org" },
     { name = "Masoud Zarepisheh", email = "zarepism@mskcc.org" }
 ]
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 classifiers = [
     "Development Status :: 1 - Planning",
     "Intended Audience :: Science/Research",
@@ -33,16 +33,16 @@ dependencies = [
     "python-dateutil>=2.8.2",
     "pytz>=2022.1",
     "qdldl>=0.1.5",
-    "scipy>=1.5.4",
+    "scipy>=1.13",
     "scs>=3.2.0",
     "six>=1.16.0",
-    "matplotlib>=3.5.3",
-    "Shapely>=1.8.4",
+    "matplotlib>=3.8",
+    "Shapely>=2.0",
     "SimpleITK>=2.0.2",
     "tabulate>=0.9.0",
     "jinja2==3.1.5",
-    "typing-extensions>=3.10.0.0",
-    "scikit-image>=0.17.2",
+    "typing-extensions>=4.8",
+    "scikit-image>=0.23",
     "patchify>=0.2.3"
 ]