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CBMutils::calcRootC update #63

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Merged
cboisvenue merged 1 commit into from
Jun 17, 2026
Merged

CBMutils::calcRootC update #63

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7 changes: 5 additions & 2 deletions LandRCBM_split3pools.R
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ defineModule(sim, list(
citation = list("citation.bib"),
documentation = list("README.md", "LandRCBM_split3pools.Rmd"), ## same file
reqdPkgs = list("PredictiveEcology/SpaDES.core", "reproducible (>= 2.1.2)", "data.table", "ggplot2", "terra",
"SpaDES.tools (>= 1.0.0.9001)", "PredictiveEcology/CBMutils@development (>= 2.1.2.0002)", "PredictiveEcology/LandR@development"),
"SpaDES.tools (>= 1.0.0.9001)", "PredictiveEcology/CBMutils@development (>= 2.5.5)", "PredictiveEcology/LandR@development"),
parameters = bindrows(
defineParameter("minMerchantableAge", "integer", 15L, NA, NA,
"Minimum age for which a cohort can have wood considered merchantable."),
Expand Down Expand Up @@ -230,7 +230,10 @@ doEvent.LandRCBM_split3pools = function(sim, eventTime, eventType) {
spinupOut$pools[nonAge0, c("Merch", "Foliage", "Other")] <- sim$aboveGroundBiomass[, .(merch, foliage, other)]

# 3. Update below ground live pools.
rootsC <- CBMutils::calcRootC(spinupOut$pools, spinupOut$state$sw_hw)
rootsC <- CBMutils::calcRootC(cbind(spinupOut$pools, sw = spinupOut$state$sw_hw == 0))[, .(
CoarseRoots = SoftwoodCoarseRoots + HardwoodCoarseRoots,
FineRoots = SoftwoodFineRoots + HardwoodFineRoots
)]
spinupOut$pools[, c("CoarseRoots", "FineRoots")] <- rootsC

# 4. Update cbm_vars
Expand Down