Merge branch 'dev' into fix-loadimage-reader-exception

Author: ericspod

.dockerignore

@@ -3,11 +3,15 @@
 __pycache__/
 docs/
 
+.vscode
+.git
+.mypy_cache
+.ruff_cache
+.pytype
 .coverage
 .coverage.*
 .coverage/
 coverage.xml
 .readthedocs.yml
-*.toml
 
 !README.md

.github/workflows/chatops.yml

@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: dispatch
-        uses: peter-evans/slash-command-dispatch@v4.0.0
+        uses: peter-evans/slash-command-dispatch@v5.0.2
         with:
           token: ${{ secrets.PR_MAINTAIN }}
           reaction-token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/codeql-analysis.yml

@@ -38,7 +38,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL

.github/workflows/conda.yml

@@ -27,12 +27,12 @@ jobs:
     steps:
     - if: runner.os == 'windows'
       name: Config pagefile (Windows only)
-      uses: al-cheb/configure-pagefile-action@v1.4
+      uses: al-cheb/configure-pagefile-action@v1.5
       with:
         minimum-size: 8GB
         maximum-size: 16GB
         disk-root: "D:"
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Clean up disk space
       run: |
         find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;

.github/workflows/cron-ngc-bundle.yml

@@ -17,7 +17,7 @@ jobs:
     if: github.repository == 'Project-MONAI/MONAI'
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
@@ -26,7 +26,7 @@ jobs:
       id: pip-cache
       run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ~/.cache/pip

.github/workflows/cron.yml

@@ -32,7 +32,7 @@ jobs:
       options: "--gpus all"
     runs-on: [self-hosted, linux, x64, common]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: apt install
       run: |
         apt-get update
@@ -82,7 +82,7 @@ jobs:
       options: "--gpus all"
     runs-on: [self-hosted, linux, x64, integration]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Install APT dependencies
       run: |
         apt-get update
@@ -131,7 +131,7 @@ jobs:
       options: "--gpus all"
     runs-on: [self-hosted, linux, x64, integration]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
       - name: Install the dependencies
@@ -233,7 +233,7 @@ jobs:
       options: "--gpus all --ipc=host"
     runs-on: [self-hosted, linux, x64, integration]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Install MONAI
       id: monai-install
       run: |

.github/workflows/docker.yml

@@ -21,7 +21,7 @@ jobs:
     if: ${{ false }}  # disable docker build job  project-monai/monai#7450
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         # full history so that we can git describe
         with:
           ref: dev
@@ -37,7 +37,7 @@ jobs:
           python setup.py build
           cat build/lib/monai/_version.py
       - name: Upload version
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v6
         with:
           name: _version.py
           path: build/lib/monai/_version.py
@@ -53,7 +53,7 @@ jobs:
     needs: versioning_dev
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         ref: dev
     - name: Download version

.github/workflows/integration.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: [self-hosted, linux, x64, command]
     steps:
     # checkout the pull request branch
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
@@ -22,7 +22,7 @@ jobs:
       id: pip-cache
       run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: |
@@ -89,7 +89,7 @@ jobs:
     runs-on: [self-hosted, linux, x64, command1]
     steps:
     # checkout the pull request branch
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
@@ -98,7 +98,7 @@ jobs:
       id: pip-cache
       run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: |

.github/workflows/pythonapp-gpu.yml

@@ -44,7 +44,7 @@ jobs:
       options: --gpus all --env NVIDIA_DISABLE_REQUIRE=true  # workaround for unsatisfied condition: cuda>=11.6
     runs-on: [self-hosted, linux, x64, common]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: apt install
       if: github.event.pull_request.merged != true
       run: |

.github/workflows/pythonapp-min.yml

@@ -30,7 +30,7 @@ jobs:
         os: [windows-latest, macOS-latest, ubuntu-latest]
     timeout-minutes: 40
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
@@ -46,7 +46,7 @@ jobs:
         echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
       shell: bash
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ${{ steps.pip-cache.outputs.dir }}
@@ -79,7 +79,7 @@ jobs:
         python-version: ['3.9', '3.10', '3.11', '3.12']
     timeout-minutes: 40
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v6
       with:
@@ -96,7 +96,7 @@ jobs:
         echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
       shell: bash
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ${{ steps.pip-cache.outputs.dir }}
@@ -128,7 +128,7 @@ jobs:
         pytorch-version: ['2.5.1', '2.6.0', '2.7.1', '2.8.0']
     timeout-minutes: 40
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
@@ -145,7 +145,7 @@ jobs:
         echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
       shell: bash
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ${{ steps.pip-cache.outputs.dir }}