diff --git a/ci/get_bundle_requirements.py b/ci/get_bundle_requirements.py index fdab36d3..9262b112 100644 --- a/ci/get_bundle_requirements.py +++ b/ci/get_bundle_requirements.py @@ -19,8 +19,6 @@ ALLOW_MONAI_RC = os.environ.get("ALLOW_MONAI_RC", "false").lower() in ("true", "1", "t", "y", "yes") -SPECIAL_LIB_LIST = ["xformers"] - def increment_version(version): """ @@ -81,12 +79,7 @@ def get_requirements(bundle, models_path, requirements_file): if package_key in metadata.keys(): optional_dict = metadata[package_key] for name, version in optional_dict.items(): - if name not in SPECIAL_LIB_LIST: - libs.append(f"{name}=={version}") - else: - if "pytorch_version" in metadata.keys(): - # remove torch from libs - libs = [lib for lib in libs if "torch" not in lib or lib == "pytorch-ignite"] + libs.append(f"{name}=={version}") if len(libs) > 0: with open(requirements_file, "w") as f: diff --git a/ci/run_premerge_cpu.sh b/ci/run_premerge_cpu.sh index 8e84ad21..87b72426 100755 --- a/ci/run_premerge_cpu.sh +++ b/ci/run_premerge_cpu.sh @@ -41,6 +41,35 @@ is_excluded() { return 1 # Return false (1) if not excluded } +init_venv() { + if [ ! -d "model_zoo_venv" ]; then # Check if the venv directory does not exist + echo "initializing pip environment" + python -m venv model_zoo_venv + source model_zoo_venv/bin/activate + pip install --upgrade pip wheel + pip install --upgrade setuptools + pip install jsonschema gdown pyyaml parameterized fire + export PYTHONPATH=$PWD + else + echo "Virtual environment model_zoo_venv already exists. Activating..." + source model_zoo_venv/bin/activate + pip install --upgrade pip wheel + pip install --upgrade setuptools + pip install jsonschema gdown pyyaml parameterized fire + export PYTHONPATH=$PWD + fi +} + +remove_venv() { + if [ -d "model_zoo_venv" ]; then # Check if the venv directory exists + echo "Removing virtual environment..." + deactivate 2>/dev/null || true # Deactivate venv, ignore errors if not activated + rm -rf model_zoo_venv # Remove the venv directory + else + echo "Virtual environment not found. Skipping removal." + fi +} + verify_bundle() { for dir in /opt/hostedtoolcache/*; do if [[ $dir != "/opt/hostedtoolcache/Python" ]]; then @@ -77,6 +106,7 @@ verify_bundle() { else include_pre_release="" fi + init_venv # Check if the requirements file exists and is not empty if [ -s "$requirements_file" ]; then echo "install required libraries for bundle: $bundle" @@ -84,6 +114,7 @@ verify_bundle() { fi # verify bundle python $(pwd)/ci/verify_bundle.py -b "$bundle" -m "min" # min tests on cpu + remove_venv fi done else diff --git a/ci/run_premerge_gpu.sh b/ci/run_premerge_gpu.sh index ae60f0bd..6aa745b6 100755 --- a/ci/run_premerge_gpu.sh +++ b/ci/run_premerge_gpu.sh @@ -35,12 +35,14 @@ init_venv() { python -m venv model_zoo_venv source model_zoo_venv/bin/activate pip install --upgrade pip wheel + pip install --upgrade setuptools pip install jsonschema gdown pyyaml parameterized fire export PYTHONPATH=$PWD else echo "Virtual environment model_zoo_venv already exists. Activating..." source model_zoo_venv/bin/activate pip install --upgrade pip wheel + pip install --upgrade setuptools pip install jsonschema gdown pyyaml parameterized fire export PYTHONPATH=$PWD fi @@ -56,12 +58,6 @@ remove_venv() { fi } -set_local_env() { - echo "set local pip environment" - pip install --upgrade pip wheel - export PYTHONPATH=$PWD -} - verify_bundle() { echo 'Run verify bundle...' head_ref=$(git rev-parse HEAD) @@ -105,10 +101,7 @@ verify_bundle() { test_cmd="torchrun $(pwd)/ci/unit_tests/runner.py --b \"$bundle\" --dist True" fi eval $test_cmd - # if not maisi_ct_generative, remove venv - if [ "$bundle" != "maisi_ct_generative" ]; then - remove_venv - fi + remove_venv done else echo "this pull request does not change any bundles, skip verify." diff --git a/models/pancreas_ct_dints_segmentation/configs/metadata.json b/models/pancreas_ct_dints_segmentation/configs/metadata.json index 44498430..355b2d7f 100644 --- a/models/pancreas_ct_dints_segmentation/configs/metadata.json +++ b/models/pancreas_ct_dints_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.5.0", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.5.1", "changelog": { + "0.5.1": "update to huggingface hosting", "0.5.0": "use monai 1.4 and update large files", "0.4.9": "update to use monai 1.3.1", "0.4.8": "add load_pretrain flag for infer", @@ -31,12 +32,15 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { "fire": "0.6.0", "nibabel": "5.2.1", "pytorch-ignite": "0.4.11", - "PyYAML": "6.0.1" + "PyYAML": "6.0.1", + "scikit-learn": "1.5.1", + "tensorboard": "2.17.0" }, + "supported_apps": {}, "name": "Pancreas CT DiNTS segmentation", "task": "Neural architecture search on pancreas CT segmentation", "description": "Searched architectures for volumetric (3D) segmentation of the pancreas from CT image", diff --git a/models/pathology_nuclei_classification/configs/metadata.json b/models/pathology_nuclei_classification/configs/metadata.json index 6ca6d528..0c9ab1b2 100644 --- a/models/pathology_nuclei_classification/configs/metadata.json +++ b/models/pathology_nuclei_classification/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.2.0", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.2.1", "changelog": { + "0.2.1": "update to huggingface hosting", "0.2.0": "update issue for IgniteInfo", "0.1.9": "update tensorrt benchmark results", "0.1.8": "enable tensorrt", @@ -26,11 +27,16 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { "nibabel": "5.2.1", "pytorch-ignite": "0.4.11", - "torchvision": "0.19.0" + "torchvision": "0.19.0", + "scipy": "1.13.1", + "scikit-learn": "1.5.1", + "tensorboard": "2.17.0", + "scikit-image": "0.23.2" }, + "supported_apps": {}, "name": "Pathology nuclei classification", "task": "Pathology Nuclei classification", "description": "A pre-trained model for Nuclei Classification within Haematoxylin & Eosin stained histology images", diff --git a/models/pathology_nuclei_segmentation_classification/configs/metadata.json b/models/pathology_nuclei_segmentation_classification/configs/metadata.json index 86e30a6f..2f4c8ef8 100644 --- a/models/pathology_nuclei_segmentation_classification/configs/metadata.json +++ b/models/pathology_nuclei_segmentation_classification/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_hovernet_20221124.json", - "version": "0.2.6", + "version": "0.2.7", "changelog": { + "0.2.7": "update to huggingface hosting", "0.2.6": "update tensorrt benchmark results", "0.2.5": "enable tensorrt", "0.2.4": "update to use monai 1.3.1", @@ -28,7 +29,10 @@ "torchvision": "0.19.0", "scipy": "1.13.1", "tqdm": "4.66.4", - "pillow": "10.4.0" + "pillow": "10.4.0", + "pytorch-ignite": "0.4.11", + "tensorboard": "2.17.0", + "nibabel": "5.2.1" }, "name": "Nuclear segmentation and classification", "task": "Nuclear segmentation and classification", diff --git a/models/pathology_nuclick_annotation/configs/metadata.json b/models/pathology_nuclick_annotation/configs/metadata.json index 51bc7244..f71048ca 100644 --- a/models/pathology_nuclick_annotation/configs/metadata.json +++ b/models/pathology_nuclick_annotation/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.2.1", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.2.2", "changelog": { + "0.2.2": "update to huggingface hosting", "0.2.1": "update issue for IgniteInfo", "0.2.0": "use monai 1.4 and update large files", "0.1.9": "update to use monai 1.3.1", @@ -27,11 +28,15 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { "nibabel": "5.2.1", "pytorch-ignite": "0.4.11", - "torchvision": "0.19.0" + "torchvision": "0.19.0", + "scipy": "1.13.1", + "scikit-image": "0.23.2", + "tensorboard": "2.17.0" }, + "supported_apps": {}, "name": "Pathology nuclick annotation", "task": "Pathology Nuclick annotation", "description": "A pre-trained model for segmenting nuclei cells with user clicks/interactions", diff --git a/models/pathology_tumor_detection/configs/metadata.json b/models/pathology_tumor_detection/configs/metadata.json index 32f7cab6..563a7150 100644 --- a/models/pathology_tumor_detection/configs/metadata.json +++ b/models/pathology_tumor_detection/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.6.2", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.6.3", "changelog": { + "0.6.3": "update to huggingface hosting", "0.6.2": "enhance readme for nccl timout issue", "0.6.1": "fix multi-gpu issue", "0.6.0": "use monai 1.4 and update large files", @@ -36,11 +37,14 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { "cucim-cu12": "24.6.0", "pandas": "2.2.1", - "torchvision": "0.19.0" + "torchvision": "0.19.0", + "pytorch-ignite": "0.4.11", + "tensorboard": "2.17.0" }, + "supported_apps": {}, "name": "Pathology tumor detection", "task": "Pathology metastasis detection", "description": "A pre-trained model for metastasis detection on Camelyon 16 dataset.", diff --git a/models/pediatric_abdominal_ct_segmentation/configs/metadata.json b/models/pediatric_abdominal_ct_segmentation/configs/metadata.json index 0ae078f0..51e2783d 100644 --- a/models/pediatric_abdominal_ct_segmentation/configs/metadata.json +++ b/models/pediatric_abdominal_ct_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.4.4", + "version": "0.4.5", "changelog": { + "0.4.5": "update to huggingface hosting", "0.4.4": "initial bundle assemblage." }, "monai_version": "1.3.0", diff --git a/models/prostate_mri_anatomy/configs/metadata.json b/models/prostate_mri_anatomy/configs/metadata.json index 1791b76e..647f6b89 100644 --- a/models/prostate_mri_anatomy/configs/metadata.json +++ b/models/prostate_mri_anatomy/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.3.4", + "version": "0.3.5", "changelog": { + "0.3.5": "update to huggingface hosting", "0.3.4": "support monai 1.4", "0.3.3": "add invertd transformation", "0.3.2": "add name tag", diff --git a/models/renalStructures_CECT_segmentation/configs/metadata.json b/models/renalStructures_CECT_segmentation/configs/metadata.json index 63016158..1e7a2d0c 100644 --- a/models/renalStructures_CECT_segmentation/configs/metadata.json +++ b/models/renalStructures_CECT_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.2.1", + "version": "0.2.2", "changelog": { + "0.2.2": "update to huggingface hosting", "0.2.1": "fix pytype error", "0.2.0": "set image_only to False", "0.1.0": "complete the model package" @@ -14,7 +15,9 @@ "pytorch-ignite": "0.4.11", "einops": "0.6.1", "fire": "0.5.0", - "torchvision": "0.14.1" + "torchvision": "0.14.1", + "tensorboard": "2.17.0", + "scipy": "1.13.1" }, "name": "Segmentation of renal structures based on contrast computed tomography scans", "task": "Renal structures segmentation", diff --git a/models/renalStructures_UNEST_segmentation/configs/metadata.json b/models/renalStructures_UNEST_segmentation/configs/metadata.json index 5147f722..e5a0444c 100644 --- a/models/renalStructures_UNEST_segmentation/configs/metadata.json +++ b/models/renalStructures_UNEST_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.2.5", + "version": "0.2.6", "changelog": { + "0.2.6": "update to huggingface hosting", "0.2.5": "update large files", "0.2.4": "fix black 24.1 format error", "0.2.3": "update AddChanneld with EnsureChannelFirstd and remove meta_dict", @@ -22,7 +23,8 @@ "einops": "0.7.0", "fire": "0.6.0", "timm": "0.6.7", - "torchvision": "0.19.0" + "torchvision": "0.19.0", + "tensorboard": "2.17.0" }, "name": "Renal structures UNEST segmentation", "task": "Renal segmentation", diff --git a/models/segmentation_template/configs/metadata.json b/models/segmentation_template/configs/metadata.json index 3bebcb9d..2ad8420b 100644 --- a/models/segmentation_template/configs/metadata.json +++ b/models/segmentation_template/configs/metadata.json @@ -1,16 +1,17 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.0.2", + "version": "0.0.3", "changelog": { + "0.0.3": "update to huggingface hosting", "0.0.2": "Minor train.yaml clarifications", "0.0.1": "Initial version" }, - "monai_version": "1.2.0", - "pytorch_version": "2.0.1", + "monai_version": "1.4.0", + "pytorch_version": "2.4.0", "numpy_version": "1.24.4", "optional_packages_version": { - "nibabel": "5.1.0", - "pytorch-ignite": "0.4.12" + "nibabel": "5.2.1", + "pytorch-ignite": "0.4.11" }, "name": "Segmentation Template", "task": "Segmentation of randomly generated spheres in 3D images", diff --git a/models/spleen_ct_segmentation/configs/metadata.json b/models/spleen_ct_segmentation/configs/metadata.json index 46137931..0ab36a84 100644 --- a/models/spleen_ct_segmentation/configs/metadata.json +++ b/models/spleen_ct_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.5.9", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.6.0", "changelog": { + "0.6.0": "update to huggingface hosting", "0.5.9": "use monai 1.4 and update large files", "0.5.8": "update to use monai 1.3.2", "0.5.7": "update to use monai 1.3.1", @@ -40,10 +41,12 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { "nibabel": "5.2.1", - "pytorch-ignite": "0.4.11" + "pytorch-ignite": "0.4.11", + "tensorboard": "2.17.0" }, + "supported_apps": {}, "name": "Spleen CT segmentation", "task": "Decathlon spleen segmentation", "description": "A pre-trained model for volumetric (3D) segmentation of the spleen from CT image", diff --git a/models/spleen_deepedit_annotation/configs/metadata.json b/models/spleen_deepedit_annotation/configs/metadata.json index 2494025f..8cc9e760 100644 --- a/models/spleen_deepedit_annotation/configs/metadata.json +++ b/models/spleen_deepedit_annotation/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.5.6", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.5.7", "changelog": { + "0.5.7": "update to huggingface hosting", "0.5.6": "use monai 1.4 and update large files", "0.5.5": "update to use monai 1.3.1", "0.5.4": "add load_pretrain flag for infer", @@ -36,12 +37,15 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { "itk": "5.4.0", "pytorch-ignite": "0.4.11", "scikit-image": "0.23.2", - "einops": "0.7.0" + "einops": "0.7.0", + "tensorboard": "2.17.0", + "nibabel": "5.2.1" }, + "supported_apps": {}, "name": "Spleen DeepEdit annotation", "task": "Decathlon spleen segmentation", "description": "This is a pre-trained model for 3D segmentation of the spleen organ from CT images using DeepEdit.", diff --git a/models/swin_unetr_btcv_segmentation/configs/metadata.json b/models/swin_unetr_btcv_segmentation/configs/metadata.json index fbd6309b..5c773cc5 100644 --- a/models/swin_unetr_btcv_segmentation/configs/metadata.json +++ b/models/swin_unetr_btcv_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.5.6", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.5.7", "changelog": { + "0.5.7": "update to huggingface hosting", "0.5.6": "update tensorrt benchmark results", "0.5.5": "enable tensorrt", "0.5.4": "update to use monai 1.3.1", @@ -36,11 +37,14 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { + "itk": "5.4.0", "nibabel": "5.2.1", "pytorch-ignite": "0.4.11", - "einops": "0.7.0" + "einops": "0.7.0", + "tensorboard": "2.17.0" }, + "supported_apps": {}, "name": "Swin UNETR BTCV segmentation", "task": "BTCV multi-organ segmentation", "description": "A pre-trained model for volumetric (3D) multi-organ segmentation from CT image", diff --git a/models/valve_landmarks/configs/metadata.json b/models/valve_landmarks/configs/metadata.json index b5d12539..f4af6436 100644 --- a/models/valve_landmarks/configs/metadata.json +++ b/models/valve_landmarks/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220729.json", - "version": "0.5.0", + "version": "0.5.1", "changelog": { + "0.5.1": "update to huggingface hosting", "0.5.0": "Fix transform usage", "0.4.3": "README.md fix", "0.4.2": "add name tag", diff --git a/models/ventricular_short_axis_3label/configs/metadata.json b/models/ventricular_short_axis_3label/configs/metadata.json index f700a801..b36051cb 100644 --- a/models/ventricular_short_axis_3label/configs/metadata.json +++ b/models/ventricular_short_axis_3label/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.3.3", + "version": "0.3.4", "changelog": { + "0.3.4": "update to huggingface hosting", "0.3.3": "update AddChanneld with EnsureChannelFirstd", "0.3.2": "add name tag", "0.3.1": "modify dataset key name", diff --git a/models/vista2d/configs/metadata.json b/models/vista2d/configs/metadata.json index cd5ae1dc..c9d54a6d 100644 --- a/models/vista2d/configs/metadata.json +++ b/models/vista2d/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", - "version": "0.3.0", + "version": "0.3.1", "changelog": { + "0.3.1": "update to huggingface hosting", "0.3.0": "update readme", "0.2.9": "fix unsupported data dtype in findContours", "0.2.8": "remove relative path in readme", diff --git a/models/vista3d/configs/metadata.json b/models/vista3d/configs/metadata.json index 8b991b1e..d661b6fe 100644 --- a/models/vista3d/configs/metadata.json +++ b/models/vista3d/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", - "version": "0.5.7", + "version": "0.5.8", "changelog": { + "0.5.8": "update to huggingface hosting", "0.5.7": "change sw padding mode to replicate", "0.5.6": "add mlflow support", "0.5.5": "add arg for trt compiler base path", @@ -30,7 +31,8 @@ "nibabel": "5.2.1", "pytorch-ignite": "0.4.11", "cucim-cu12": "24.6.0", - "mlflow": "2.17.2" + "mlflow": "2.17.2", + "tensorboard": "2.17.0" }, "supported_apps": { "vista3d-nim": "" diff --git a/models/wholeBody_ct_segmentation/configs/metadata.json b/models/wholeBody_ct_segmentation/configs/metadata.json index aef40783..bc301235 100644 --- a/models/wholeBody_ct_segmentation/configs/metadata.json +++ b/models/wholeBody_ct_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.2.5", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.2.6", "changelog": { + "0.2.6": "update to huggingface hosting", "0.2.5": "use monai 1.4 and update large files", "0.2.4": "update to use monai 1.3.1", "0.2.3": "add load_pretrain flag for infer", @@ -23,10 +24,13 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { + "itk": "5.4.0", "nibabel": "5.2.1", - "pytorch-ignite": "0.4.11" + "pytorch-ignite": "0.4.11", + "tensorboard": "2.17.0" }, + "supported_apps": {}, "name": "Whole body CT segmentation", "task": "TotalSegmentator Segmentation", "description": "A pre-trained SegResNet model for volumetric (3D) segmentation of the 104 whole body segments", diff --git a/models/wholeBrainSeg_Large_UNEST_segmentation/configs/metadata.json b/models/wholeBrainSeg_Large_UNEST_segmentation/configs/metadata.json index aa5ed32b..b789b2ef 100644 --- a/models/wholeBrainSeg_Large_UNEST_segmentation/configs/metadata.json +++ b/models/wholeBrainSeg_Large_UNEST_segmentation/configs/metadata.json @@ -1,7 +1,8 @@ { - "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.2.5", + "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20240725.json", + "version": "0.2.6", "changelog": { + "0.2.6": "update to huggingface hosting", "0.2.5": "update large files", "0.2.4": "fix black 24.1 format error", "0.2.3": "fix PYTHONPATH in readme.md", @@ -15,14 +16,16 @@ "monai_version": "1.4.0", "pytorch_version": "2.4.0", "numpy_version": "1.24.4", - "optional_packages_version": { + "required_packages_version": { "nibabel": "5.2.1", "pytorch-ignite": "0.4.11", "einops": "0.7.0", "fire": "0.6.0", "timm": "0.6.7", - "torchvision": "0.19.0" + "torchvision": "0.19.0", + "tensorboard": "2.17.0" }, + "supported_apps": {}, "name": "Whole brain large UNEST segmentation", "task": "Whole Brain Segmentation", "description": "A 3D transformer-based model for whole brain segmentation from T1W MRI image",