Modify biocontainer snippet.

Author: Guangzhen-Jin

docs/snippets/examples/apps/apptainer.md

@@ -1,4 +1,4 @@
-<!-- Template snippet: {cluster} = lowercase cluster name (e.g. "{cluster}"). Replaced at build time by `apptainer` in main.py. -->
+<!-- Template snippet: {CLUSTER} = title-case cluster name (e.g. "{CLUSTER}"), {cluster} = lowercase (e.g. "{cluster}"). Replaced at build time by `apptainer_snippet` in main.py. -->
 # Apptainer
 
 !!! note

docs/snippets/examples/apps/biocontainers.md

@@ -1,3 +1,4 @@
+<!-- Template snippet: {CLUSTER} = title-case cluster name (e.g. "{CLUSTER}"), {cluster} = lowercase (e.g. "{cluster}"). Replaced at build time by `biocontainers_snippet` in main.py. -->
 # BioContainers Collection
 
 ## What is BioContainers?
@@ -6,13 +7,13 @@ The BioContainers project came from the idea of using the containers-based techn
 
 ## Getting Started
 
-Users can download bioinformatic containers from the [BioContainers.pro](https://biocontainers.pro) and run them directly using Singularity instructions from the corresponding container’s catalog page.
+Users can download bioinformatic containers from the [BioContainers.pro](https://biocontainers.pro) and run them directly using Apptainer instructions from the corresponding container’s catalog page.
 
-Brief Singularity guide and examples are available at the [Bell Singularity user guide](singularity.md) page. Detailed Singularity user guide is available at: [sylabs.io/guides/3.8/user-guide](https://sylabs.io/guides/3.8/user-guide/)
+Brief Apptainer guide and examples are available at the [{CLUSTER} Apptainer user guide](apptainer.md) page. Detailed Apptainer user guide is available at: [sylabs.io/guides/3.8/user-guide](https://sylabs.io/guides/3.8/user-guide/)
 
 In addition, a subset of pre-downloaded biocontainers wrapped into convenient software modules are provided. These modules wrap underlying complexity and provide the same commands that are expected from non-containerized versions of each application.
 
-On Bell, type the command below to see the lists of biocontainers we deployed.
+On {CLUSTER}, type the command below to see the lists of biocontainers we deployed.
 
 ```
 module load biocontainers

docs/userguides/bell/run/examples/apps/biocontainers.md

@@ -8,6 +8,6 @@ search:
   boost: 2
 ---
 
---8<-- "docs/snippets/examples/apps/biocontainers.md"
+{{ biocontainers_snippet(resource) }}
 
 [**Back to the Specific Applications section**](../apps.md)

main.py

@@ -702,7 +702,13 @@ def apptainer_snippet(resource):
         with open("docs/snippets/examples/apps/apptainer.md", "r") as f:
             content = f.read()
         return content.replace("{CLUSTER}", resource.title()).replace("{cluster}", resource.lower())
-    
+
+    @env.macro
+    def biocontainers_snippet(resource):
+        with open("docs/snippets/examples/apps/biocontainers.md", "r") as f:
+            content = f.read()
+        return content.replace("{CLUSTER}", resource.title()).replace("{cluster}", resource.lower())
+
     @env.macro
     def resource_use(resource):
         with open("docs/snippets/resourceuse.md", "r") as f: