ci: fail if output files have not been updated prior to PR #508

	name: CI

	on:
	push:
	branches: [master]
	pull_request:
	branches: [master]
	schedule:
	- cron: "0 5 * * 0"


	# Cancel any in-progress runs when a new run is triggered
	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	build:
	name: CI
	runs-on: ubuntu-latest

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	with:
	ref: ${{ github.head_ref }} # Checks out the branch from the fork
	repository: ${{ github.event.pull_request.head.repo.full_name }} # The fork's repository
	persist-credentials: true # Ensures the GitHub token is available for pushing

	- name: Setup micromamba
	uses: mamba-org/setup-micromamba@v2
	with:
	micromamba-version: latest
	environment-file: environment.yaml
	log-level: debug
	init-shell: bash
	cache-environment: true
	cache-downloads: true

	- name: Run unit tests
	run: \|
	make unit-test

	- name: Test snakemake workflows
	run: \|
	make test

	- name: Upload artifacts
	uses: actions/upload-artifact@v4
	with:
	name: technology-data
	path: outputs/

	- name: Commit and push changes
	run: \|
	git config user.name "github-actions[bot]"
	git config user.email "github-actions[bot]@users.noreply.github.com"
	git add outputs/
	git commit -m "Commit generated files from make test"
	git push origin ${{ github.head_ref }}

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