ci: fail if output files have not been updated prior to PR #516

	name: CI

	on:
	# push:
	# branches: [master]
	pull_request:
	branches: [master]
	# schedule:
	# - cron: "0 5 * * 0"

	env:
	PREPARATION_COMMIT: '[github-actions.ci] update output data'

	# Cancel any in-progress runs when a new run is triggered
	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	build:
	name: CI
	runs-on: ubuntu-latest

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Setup micromamba
	uses: mamba-org/setup-micromamba@v2
	with:
	micromamba-version: latest
	environment-file: environment.yaml
	log-level: debug
	init-shell: bash
	cache-environment: true
	cache-downloads: true

	- name: Run unit tests
	run: \|
	make unit-test

	- name: Test snakemake workflows
	run: \|
	make test

	- name: Commit changes
	uses: stefanzweifel/git-auto-commit-action@v5
	with:
	branch: ${{ github.ref_name }}
	commit_message: '${{ env.PREPARATION_COMMIT }}'

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