add PytestTester from numpy

Author: grlee77

pywt/__init__.py

@@ -35,5 +35,6 @@
 
 from pywt.version import version as __version__
 
-from numpy.testing import Tester
-test = Tester().test
+from ._pytesttester import PytestTester
+test = PytestTester(__name__)
+del PytestTester

pywt/_pytesttester.py

@@ -0,0 +1,209 @@
+"""
+Pytest test running.
+
+This module implements the ``test()`` function for NumPy modules. The usual
+boiler plate for doing that is to put the following in the module
+``__init__.py`` file::
+
+    from numpy._pytesttester import PytestTester
+    test = PytestTester(__name__).test
+    del PytestTester
+
+
+Warnings filtering and other runtime settings should be dealt with in the
+``pytest.ini`` file in the numpy repo root. The behavior of the test depends on
+whether or not that file is found as follows:
+
+* ``pytest.ini`` is present (develop mode)
+    All warnings except those explicily filtered out are raised as error.
+* ``pytest.ini`` is absent (release mode)
+    DeprecationWarnings and PendingDeprecationWarnings are ignored, other
+    warnings are passed through.
+
+In practice, tests run from the numpy repo are run in develop mode. That
+includes the standard ``python runtests.py`` invocation.
+
+This module is imported by every numpy subpackage, so lies at the top level to
+simplify circular import issues. For the same reason, it contains no numpy
+imports at module scope, instead importing numpy within function calls.
+"""
+from __future__ import division, absolute_import, print_function
+
+import sys
+import os
+
+__all__ = ['PytestTester']
+
+
+
+def _show_numpy_info():
+    import numpy as np
+
+    print("NumPy version %s" % np.__version__)
+    relaxed_strides = np.ones((10, 1), order="C").flags.f_contiguous
+    print("NumPy relaxed strides checking option:", relaxed_strides)
+
+
+class PytestTester(object):
+    """
+    Pytest test runner.
+
+    This class is made available in ``numpy.testing``, and a test function
+    is typically added to a package's __init__.py like so::
+
+      from numpy.testing import PytestTester
+      test = PytestTester(__name__).test
+      del PytestTester
+
+    Calling this test function finds and runs all tests associated with the
+    module and all its sub-modules.
+
+    Attributes
+    ----------
+    module_name : str
+        Full path to the package to test.
+
+    Parameters
+    ----------
+    module_name : module name
+        The name of the module to test.
+
+    """
+    def __init__(self, module_name):
+        self.module_name = module_name
+
+    def __call__(self, label='fast', verbose=1, extra_argv=None,
+                 doctests=False, coverage=False, durations=-1, tests=None):
+        """
+        Run tests for module using pytest.
+
+        Parameters
+        ----------
+        label : {'fast', 'full'}, optional
+            Identifies the tests to run. When set to 'fast', tests decorated
+            with `pytest.mark.slow` are skipped, when 'full', the slow marker
+            is ignored.
+        verbose : int, optional
+            Verbosity value for test outputs, in the range 1-3. Default is 1.
+        extra_argv : list, optional
+            List with any extra arguments to pass to pytests.
+        doctests : bool, optional
+            .. note:: Not supported
+        coverage : bool, optional
+            If True, report coverage of NumPy code. Default is False.
+            Requires installation of (pip) pytest-cov.
+        durations : int, optional
+            If < 0, do nothing, If 0, report time of all tests, if > 0,
+            report the time of the slowest `timer` tests. Default is -1.
+        tests : test or list of tests
+            Tests to be executed with pytest '--pyargs'
+
+        Returns
+        -------
+        result : bool
+            Return True on success, false otherwise.
+
+        Notes
+        -----
+        Each NumPy module exposes `test` in its namespace to run all tests for
+        it. For example, to run all tests for numpy.lib:
+
+        >>> np.lib.test() #doctest: +SKIP
+
+        Examples
+        --------
+        >>> result = np.lib.test() #doctest: +SKIP
+        ...
+        1023 passed, 2 skipped, 6 deselected, 1 xfailed in 10.39 seconds
+        >>> result
+        True
+
+        """
+        import pytest
+        import warnings
+
+        #FIXME This is no longer needed? Assume it was for use in tests.
+        # cap verbosity at 3, which is equivalent to the pytest '-vv' option
+        #from . import utils
+        #verbose = min(int(verbose), 3)
+        #utils.verbose = verbose
+        #
+
+        module = sys.modules[self.module_name]
+        module_path = os.path.abspath(module.__path__[0])
+
+        # setup the pytest arguments
+        pytest_args = ["-l"]
+
+        # offset verbosity. The "-q" cancels a "-v".
+        pytest_args += ["-q"]
+
+        # Filter out distutils cpu warnings (could be localized to
+        # distutils tests). ASV has problems with top level import,
+        # so fetch module for suppression here.
+        with warnings.catch_warnings():
+            warnings.simplefilter("always")
+            from numpy.distutils import cpuinfo
+
+        # Filter out annoying import messages. Want these in both develop and
+        # release mode.
+        pytest_args += [
+            "-W ignore:Not importing directory",
+            "-W ignore:numpy.dtype size changed",
+            "-W ignore:numpy.ufunc size changed",
+            "-W ignore::UserWarning:cpuinfo",
+            ]
+
+        # When testing matrices, ignore their PendingDeprecationWarnings
+        pytest_args += [
+            "-W ignore:the matrix subclass is not",
+            ]
+
+        # Ignore python2.7 -3 warnings
+        pytest_args += [
+            r"-W ignore:sys\.exc_clear\(\) not supported in 3\.x:DeprecationWarning",
+            r"-W ignore:in 3\.x, __setslice__:DeprecationWarning",
+            r"-W ignore:in 3\.x, __getslice__:DeprecationWarning",
+            r"-W ignore:buffer\(\) not supported in 3\.x:DeprecationWarning",
+            r"-W ignore:CObject type is not supported in 3\.x:DeprecationWarning",
+            r"-W ignore:comparing unequal types not supported in 3\.x:DeprecationWarning",
+            r"-W ignore:the commands module has been removed in Python 3\.0:DeprecationWarning",
+            r"-W ignore:The 'new' module has been removed in Python 3\.0:DeprecationWarning",
+            ]
+
+
+        if doctests:
+            raise ValueError("Doctests not supported")
+
+        if extra_argv:
+            pytest_args += list(extra_argv)
+
+        if verbose > 1:
+            pytest_args += ["-" + "v"*(verbose - 1)]
+
+        if coverage:
+            pytest_args += ["--cov=" + module_path]
+
+        if label == "fast":
+            pytest_args += ["-m", "not slow"]
+        elif label != "full":
+            pytest_args += ["-m", label]
+
+        if durations >= 0:
+            pytest_args += ["--durations=%s" % durations]
+
+        if tests is None:
+            tests = [self.module_name]
+
+        pytest_args += ["--pyargs"] + list(tests)
+
+
+        # run tests.
+        _show_numpy_info()
+
+        try:
+            code = pytest.main(pytest_args)
+        except SystemExit as exc:
+            code = exc.code
+
+        return code == 0