This tab allows the use of Neuroglancer, a visualization package, to visualize the generated data.
Raw Images: Select the image stack that was used for the auto-label process.
Model Output: Select the .h5 file that was generated during the auto-label process. If you used a semantic 3D model, the file would end with “.h5_s3D_out”; If you used an instance 3D model, the file would end with “.h5_i3D_out”.
X Scale, Y scale, Z scale: Enter the X scale, Y scale, and Z scale. Neuroglancer needs to know if there are non-square pixel dimensions.
Segmentation threshold: This is a number between 0 and 255 and can cut off certain grayscales. Use 255 to keep all data.
Click "Launch Neuroglancer". Once the visualization is ready (which may take a moment), a blue link will appear in the software window. Clicking the link will open the default browser and will display the reconstruction.