feat: Add 2D data processing support with do_2d flag#162
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donglaiw merged 1 commit intoPytorchConnectomics:masterfrom Oct 29, 2025
Merged
feat: Add 2D data processing support with do_2d flag#162donglaiw merged 1 commit intoPytorchConnectomics:masterfrom
donglaiw merged 1 commit intoPytorchConnectomics:masterfrom
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- Add do_2d parameter to DataConfig and InferenceDataConfig - Modify MonaiConnectomicsDataset to handle 2D dimensions when do_2d=True - Update model wrapper to squeeze/unsqueeze depth dimension for 2D models - Disable sliding window inference for 2D models, use direct inference - Make TTA flip axes dynamic based on data dimensions (2D vs 3D) - Switch evaluation metric from Jaccard to Adapted Rand Error for instance segmentation - Update monai2d_worm.yaml config to enable 2D processing This enables seamless 2D data processing while maintaining 3D compatibility.
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This enables seamless 2D data processing while maintaining 3D compatibility.