fix CTS unavailability

Author: hechth

galaxy/generate_options.py

@@ -4,20 +4,31 @@
 # this add to path the home dir, so it can be called from anywhere
 sys.path.append(os.path.split(sys.path[0])[0])
 
+from MSMetaEnhancer.libs.converters.web import CTS, CIR, IDSM, PubChem, BridgeDb
+from MSMetaEnhancer.libs.converters.compute import RDKit
 from MSMetaEnhancer.libs.utils.ConverterBuilder import ConverterBuilder
+
 from MSMetaEnhancer.libs.converters.web import __all__ as web_converters
 from MSMetaEnhancer.libs.converters.compute import __all__ as compute_converters
 
 
 def generate_options():
+    ConverterBuilder.register([CTS, CIR, IDSM, PubChem, BridgeDb, RDKit])
+    
     jobs = []
     converters = web_converters + compute_converters
-    built_converters, built_web_converters = ConverterBuilder().build_converters(
+ 
+    builder = ConverterBuilder()
+    builder.validate_converters(converters)
+    built_compute_converters, built_web_converters = builder.build_converters(
         None, converters
     )
 
-    for converter in built_converters:
-        jobs += built_converters[converter].get_conversion_functions()
+    for converter in built_compute_converters.values():
+        jobs += converter.get_conversion_functions()
+
+    for converter in built_web_converters.values():
+        jobs += converter.get_conversion_functions()
 
     for job in jobs:
         print(

tests/test_CTS.py

@@ -8,7 +8,10 @@
 
 @pytest.mark.dependency()
 def test_service_available():
-    asyncio.run(wrap_with_session(CTS, "casno_to_inchikey", ["7783-89-3"]))
+    try:
+        asyncio.run(wrap_with_session(CTS, "casno_to_inchikey", ["7783-89-3"]))
+    except:
+        assert False
 
 
 @pytest.mark.dependency(depends=["test_service_available"])