Upload PCluster files to bucket

Author: ravigurram8

deploy.sh

@@ -271,6 +271,13 @@ rm -f nextflow-advanced.tar.gz
 tar -czf rstudio.tar.gz RStudio/*
 aws s3 cp ./rstudio.tar.gz s3://"$bucketname/"
 rm -f rstudio.tar.gz
+cp ./PCluster/machine-images/config/infra/files/pcluster/slurm-main.yaml  ./PCluster/machine-images/config/infra/files/pcluster/slurm.yaml
+cp ./PCluster/machine-images/config/infra/files/pcluster/batch-main.yaml  ./PCluster/machine-images/config/infra/files/pcluster/batch.yaml
+sed -i 's/tempbucket/$bucketname/g' ./PCluster/machine-images/config/infra/files/pcluster/slurm.yaml
+sed -i 's/tempbucket/$bucketname/g' ./PCluster/machine-images/config/infra/files/pcluster/batch.yaml
+tar -czf PCluster.tar.gz PCluster/*
+aws s3 cp ./PCluster.tar.gz s3://"$bucketname/"
+rm -f PCluster.tar.gz
 
 echo "Copying Database seed-data files to new bucket"
 cd "$localhome" || exit