Added a Linear TS search job adapter
#1146
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: [main] | |
| types: [opened, synchronize, reopened] | |
| schedule: | |
| - cron: '0 0 * * *' | |
| jobs: | |
| build-and-test: | |
| name: CI and Functional Tests | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout ARC | |
| uses: actions/checkout@v6 | |
| with: | |
| path: ARC | |
| - name: Clean Ubuntu Image | |
| uses: jlumbroso/free-disk-space@v1.3.1 | |
| with: | |
| tool-cache: true | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: true | |
| swap-storage: false | |
| - name: Set up micromamba (arc_env) | |
| uses: mamba-org/setup-micromamba@v3 | |
| with: | |
| environment-name: arc_env | |
| environment-file: ARC/environment.yml | |
| cache-environment: false | |
| cache-downloads: true | |
| generate-run-shell: true | |
| - name: Install conda in micromamba base | |
| shell: micromamba-shell {0} | |
| run: | | |
| echo "::group::Install conda in micromamba base" | |
| micromamba install -n base -c conda-forge conda | |
| echo "::endgroup::" | |
| - name: Export ARC paths | |
| shell: micromamba-shell {0} | |
| working-directory: ARC | |
| run: | | |
| echo "PATH=$PATH:$PWD" >> "$GITHUB_ENV" | |
| echo "PYTHONPATH=$PYTHONPATH:$PWD" >> "$GITHUB_ENV" | |
| - name: Install all extras - CI | |
| shell: micromamba-shell {0} | |
| working-directory: ARC | |
| env: | |
| MAMBA_ALWAYS_YES: "true" | |
| CONDA_ALWAYS_YES: "true" | |
| run: make install-ci | |
| - name: Set TS-GCN and AutoTST in PYTHONPATH | |
| shell: micromamba-shell {0} | |
| working-directory: ARC | |
| run: | | |
| echo "PYTHONPATH=$(realpath ../TS-GCN):$(realpath ../AutoTST):$PYTHONPATH" >> $GITHUB_ENV | |
| - name: Compile ARC molecule | |
| shell: micromamba-shell {0} | |
| working-directory: ARC | |
| env: | |
| ARC_COVERAGE: 1 | |
| run: | | |
| make compile | |
| - name: Run Unit Tests | |
| shell: micromamba-shell {0} | |
| working-directory: ARC | |
| env: | |
| ARC_COVERAGE: 1 | |
| CYTHON_TRACE: 1 | |
| run: | | |
| echo "Running Unit Tests..." | |
| export PYTHONPATH="${{ github.workspace }}/AutoTST:${{ github.workspace }}/KinBot:$PYTHONPATH" | |
| pytest arc/ --cov --cov-report=xml -ra -vv -n 4 --dist worksteal | |
| - name: Run Functional Tests | |
| shell: micromamba-shell {0} | |
| working-directory: ${{ github.workspace }}/ARC | |
| env: | |
| ARC_COVERAGE: 1 | |
| CYTHON_TRACE: 1 | |
| run: | | |
| echo "Running Functional Tests from $(pwd)..." | |
| export PYTHONPATH="${{ github.workspace }}/AutoTST:${{ github.workspace }}/KinBot:$PYTHONPATH" | |
| pytest functional/ --cov --cov-append --cov-report=xml -ra -vv -n 4 --dist worksteal | |
| - name: Upload coverage data | |
| uses: codecov/codecov-action@v6 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ARC/coverage.xml | |
| flags: unittests,functionaltests | |
| name: codecov-umbrella | |
| verbose: true | |
| fail_ci_if_error: false |