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3 changes: 3 additions & 0 deletions CITATION.cff
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Expand Up @@ -34,6 +34,9 @@ authors:
- family-names: Leo
given-names: Simone
orcid: https://orcid.org/0000-0001-8271-5429
- family-names: Orviz
given-names: Pablo
orcid: https://orcid.org/0000-0002-2473-6405
- family-names: Pireddu
given-names: Luca
orcid: https://orcid.org/0000-0002-4663-5613
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -565,6 +565,7 @@ Options:
* Copyright 2024-2026 National Institute of Informatics (NII), JP
* Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
* Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
* Copyright 2026 Spanish National Research Council (CSIC), ES

Licensed under the
Apache License, version 2.0 <https://www.apache.org/licenses/LICENSE-2.0>,
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1 change: 1 addition & 0 deletions examples/fastapi/main.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions examples/read_test_metadata.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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3 changes: 3 additions & 0 deletions rocrate/__init__.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
Expand Down Expand Up @@ -42,6 +43,7 @@
'Sebastiaan Huber',
'Bruno Kinoshita',
'Simone Leo',
'Pablo Orviz',
'Luca Pireddu',
'Laura Rodríguez-Navas',
'Raül Sirvent',
Expand All @@ -58,6 +60,7 @@
Copyright 2024-2026 National Institute of Informatics (NII), JP
Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
Copyright 2026 Spanish National Research Council (CSIC), ES
"""
__license__ = ("Apache License, version 2.0 "
"<https://www.apache.org/licenses/LICENSE-2.0>")
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1 change: 1 addition & 0 deletions rocrate/cli.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/memory_buffer.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/metadata.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/__init__.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/computationalworkflow.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/computerlanguage.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/contextentity.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/creativework.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/data_entity.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/dataset.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/entity.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/file.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/file_or_dir.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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3 changes: 2 additions & 1 deletion rocrate/model/metadata.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
Expand Down Expand Up @@ -88,7 +89,7 @@ def generate(self):

def stream(self, chunk_size=8192):
content = self.generate()
yield self.id, str.encode(json.dumps(content, indent=4, sort_keys=True), encoding='utf-8')
yield self.id, str.encode(json.dumps(content, indent=4, sort_keys=True, ensure_ascii=False), encoding='utf-8')

def _has_writeable_stream(self):
return True
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1 change: 1 addition & 0 deletions rocrate/model/person.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/preview.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/root_dataset.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/softwareapplication.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/testdefinition.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/testinstance.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/testservice.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/model/testsuite.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/rocrate.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/utils.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions rocrate/vocabs.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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2 changes: 2 additions & 0 deletions setup.py
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Expand Up @@ -9,6 +9,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
Expand Down Expand Up @@ -70,6 +71,7 @@
'Sebastiaan Huber',
'Bruno Kinoshita',
'Simone Leo',
'Pablo Orviz',
'Luca Pireddu',
'Laura Rodríguez-Navas',
'Raül Sirvent',
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1 change: 1 addition & 0 deletions test/conftest.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_cli.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_jsonld.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_metadata.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_model.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_read.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_readwrite.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_test_metadata.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_utils.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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1 change: 1 addition & 0 deletions test/test_workflow_ro_crate.py
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Expand Up @@ -7,6 +7,7 @@
# Copyright 2024-2026 National Institute of Informatics (NII), JP
# Copyright 2025-2026 Senckenberg Society for Nature Research (SGN), DE
# Copyright 2025-2026 European Molecular Biology Laboratory (EMBL), Heidelberg, DE
# Copyright 2026 Spanish National Research Council (CSIC), ES
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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