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Merged
RicardoRyn merged 6 commits into from
Aug 11, 2025
Merged

Feat #19

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1fdd205
refactor(bar): Remove the legacy `plot_one_group_violin_figure_old` f…
RicardoRyn Aug 8, 2025
3080281
docs(bar): Update function comments and fix static analysis errors
RicardoRyn Aug 8, 2025
54881e3
style(bar): Format code and remove trailing whitespace
RicardoRyn Aug 11, 2025
f20f462
test(connec): added some test scripts
RicardoRyn Aug 11, 2025
4ed3e3a
build(deps): update dependencies to ensure correct saving of brain co…
RicardoRyn Aug 11, 2025
7a372eb
fix(connec): fix issue with line_color display under color scale
RicardoRyn Aug 11, 2025
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3 changes: 1 addition & 2 deletions .gitignore
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Expand Up @@ -18,8 +18,7 @@ notebooks/
# docs
docs/changelog.md

# tests
tests/
tests/figures/*

# utils
utils/
14 changes: 8 additions & 6 deletions README.md
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Expand Up @@ -51,13 +51,15 @@ pip install .

`plotfig` 依赖若干核心库，这些依赖将在安装过程中自动处理：

- [matplotlib](https://matplotlib.org/) ≥ 3.10.
- [mne-connectivity](https://mne.tools/mne-connectivity/stable/index.html) ≥ 0.7.
- [nibabel](https://nipy.org/nibabel/) ≥ 5.3.
- [matplotlib](https://matplotlib.org/) ≥ 3.10.1
- [mne-connectivity](https://mne.tools/mne-connectivity/stable/index.html) ≥ 0.7.0
- [nibabel](https://nipy.org/nibabel/) ≥ 5.3.2
- [numpy](https://numpy.org/) ≥ 2.2.4
- [pandas](https://pandas.pydata.org/) ≥ 2.2.
- [plotly](https://plotly.com/) ≥ 6.0.1
- [scipy](https://scipy.org/) ≥ 1.15.
- [pandas](https://pandas.pydata.org/) ≥ 2.2.3
- [plotly](https://plotly.com/) ≥ 6.1.1
- [kaleido](https://github.com/plotly/Kaleido) ≥ 1.0.0
- [scipy](https://scipy.org/) ≥ 1.15.2
- [loguru](https://loguru.readthedocs.io/en/stable/) ≥ 0.7.3
- [surfplot](https://github.com/danjgale/surfplot) 需使用其 GitHub 仓库中的最新版，而非 PyPI 上的版本，因后者尚未包含所需功能。

> ⚠️ **指定 `surfplot` 版本**
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4 changes: 3 additions & 1 deletion docs/installation.md
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Expand Up @@ -27,8 +27,10 @@ pip install .
- [nibabel](https://nipy.org/nibabel/) ≥ 5.3.2
- [numpy](https://numpy.org/) ≥ 2.2.4
- [pandas](https://pandas.pydata.org/) ≥ 2.2.3
- [plotly](https://plotly.com/) ≥ 6.0.1
- [plotly](https://plotly.com/) ≥ 6.1.1
- [kaleido](https://github.com/plotly/Kaleido) ≥ 1.0.0
Comment thread
RicardoRyn marked this conversation as resolved.
- [scipy](https://scipy.org/) ≥ 1.15.2
- [loguru](https://loguru.readthedocs.io/en/stable/) ≥ 0.7.3
- [surfplot](https://github.com/danjgale/surfplot) 需使用其 GitHub 仓库中的最新版，而非 PyPI 上的版本，因后者尚未包含所需功能。

!!! warning "指定 `surfplot` 版本"
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4 changes: 3 additions & 1 deletion pyproject.toml
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Expand Up @@ -9,12 +9,14 @@ authors = [
{ name = "Ricardo Ryn", email = "ricardoRyn1317@gmail.com" }
]
dependencies = [
"kaleido>=1.0.0",
"loguru>=0.7.3",
"matplotlib>=3.10.1",
"mne-connectivity>=0.7.0",
"nibabel>=5.3.2",
"numpy>=2.2.4",
"pandas>=2.2.3",
"plotly>=6.0.1",
"plotly>=6.1.1",
"scipy>=1.15.2",
"surfplot",
]
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2 changes: 0 additions & 2 deletions src/plotfig/__init__.py
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@@ -1,7 +1,6 @@
from .bar import (
plot_one_group_bar_figure,
plot_one_group_violin_figure,
plot_one_group_violin_figure_old,
plot_multi_group_bar_figure,
)
from .correlation import plot_correlation_figure
Expand All @@ -23,7 +22,6 @@
__all__ = [
"plot_one_group_bar_figure",
"plot_one_group_violin_figure",
"plot_one_group_violin_figure_old",
"plot_multi_group_bar_figure",
"plot_correlation_figure",
"plot_matrix_figure",
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