ORION/pyproject.toml at master · RobokopU24/ORION · GitHub

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[build-system]
requires = ["uv_build >= 0.8.0"]
build-backend = "uv_build"

[project]
name = "robokop-orion"
version = "1.3.3"
description = "ORION ingests data from knowledge bases and converts it into interoperable Biolink Model knowledge graphs."
license = "MIT"
license-files = ["LICEN[CS]E*"]
readme = "README.md"
requires-python = ">=3.12"
dependencies = [
    "bmt>=1.4.6",
    "jsonlines>=4.0.0",
    "orjson>=3.11.7",
    "pydantic-settings>=2.13.0",
    "pyyaml>=6.0.1",
    "requests>=2.33.1",
    "requests-toolbelt>=1.0.0",
    "robokop-genetics>=0.8.0",
    "uuid-utils>=0.14.1",
    "xxhash>=3.6.0",
]

[project.optional-dependencies]
robokop = [
    "beautifulsoup4>=4.12.3",
    "celery>=5.4.0",
    "curies>=0.7.9",
    "intermine",
    "mysql-connector-python>=9.4.0",
    "neo4j>=5.28.0",
    "openpyxl>=3.1.5",
    "pandas>=2.3.3",
    "polars>=1.19.0",
    "prefixmaps>=0.2.6",
    "psycopg2-binary>=2.9.9",
    "pyoxigraph>=0.3.22",
    "redis>=5.2.1",
]

[project.scripts]
orion-build = "orion.build_manager:main"
orion-ingest = "orion.ingest_pipeline:main"
orion-merge = "orion.cli.merge_kgs:main"
orion-meta-kg = "orion.cli.generate_meta_kg:main"
orion-redundant-kg = "orion.cli.generate_redundant_kg:main"
orion-ac = "orion.cli.generate_ac_files:main"
orion-neo4j-dump = "orion.cli.neo4j_dump:main"
orion-memgraph-dump = "orion.cli.memgraph_dump:main"

[dependency-groups]
dev = [
    "pytest>=9.0.3",
]

[tool.uv.build-backend]
module-root = ""
module-name = "orion"

[tool.uv.sources]
intermine = { git = "https://github.com/EvanDietzMorris/intermine-ws-python.git" }