The Colab notebook

[Jameel9]

Hi RFdiffusion team,

Does the colab notebook work properly to design something against a user-specific target (pdb file)?

The hint at the end says "leave blank to get an upload prompt", however, the notebook doesn't do that. Although it was set in the function to do so

def get_pdb(pdb_code=None):
  if pdb_code is None or pdb_code == "":
    upload_dict = files.upload()

it doesn't!

Even if I enter a PDB ID and or any random word, it keeps designing something irrelevant.

[rclune]

Thank you for your question.

Unfortunately the CoLab notebook is not directly related to this repo, it was created some time ago by Sergey Ochinikov, the related repo can be found here. Recreating this issue there may be helpful, though I'm not sure how often maintenance gets performed on the notebooks.

Have you tried directly using the RFD repo? RFD3 has also recently been released and will likely be easier to install and perform even better for what you are working on.

[Jameel9]

Thank you @rclune!
I see. I haven't tried RFD3, but have a plan to.