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…codebase consistent with dev (#17) * fix: prevent chain_ids in outer scope from being overridden by loop (#13) * feat: performance improvements for parsing * chore: ruff formatting * chore: ruff formatting * fix: address python version and docstring changes --------- Co-authored-by: Richard Shuai <richardshuai98@gmail.com> Co-authored-by: Nathaniel Corley <nscorley@gmail.com>
* fix: prevent chain_ids in outer scope from being overridden by loop (#13) * refactor: datasets initial commit with backwards compatibility * docs: first pass at dataset docs * chore: update test metadata parquet files * fix: passing tests * docs: updated docs for datasets * fix: tests * fix: dataset exploration formatting * fix: caching test * chore: PR comments * fix: CI * fix: CI * fix: CI * fix: CI --------- Co-authored-by: Richard Shuai <richardshuai98@gmail.com>
* refactor: datasets initial commit with backwards compatibility * docs: first pass at dataset docs * fix: passing tests * docs: updated docs for datasets * fix: tests * fix: dataset exploration formatting * fix: caching test * docs: fix docstrings, update API * refactor: datasets revised (#25) * fix: prevent chain_ids in outer scope from being overridden by loop (#13) * refactor: datasets initial commit with backwards compatibility * docs: first pass at dataset docs * chore: update test metadata parquet files * fix: passing tests * docs: updated docs for datasets * fix: tests * fix: dataset exploration formatting * fix: caching test * chore: PR comments * fix: CI * fix: CI * fix: CI * fix: CI --------- Co-authored-by: Richard Shuai <richardshuai98@gmail.com> * refactor: datasets initial commit with backwards compatibility * docs: first pass at dataset docs * fix: passing tests * docs: updated docs for datasets * fix: tests * fix: caching test * docs: fix docstrings, update API * refactor: datasets revised (#25) * fix: prevent chain_ids in outer scope from being overridden by loop (#13) * refactor: datasets initial commit with backwards compatibility * docs: first pass at dataset docs * chore: update test metadata parquet files * fix: passing tests * docs: updated docs for datasets * fix: tests * fix: dataset exploration formatting * fix: caching test * chore: PR comments * fix: CI * fix: CI * fix: CI * fix: CI --------- Co-authored-by: Richard Shuai <richardshuai98@gmail.com> * fix: tests * docs: update readme --------- Co-authored-by: Richard Shuai <richardshuai98@gmail.com>
* fix: inference APIs for RF3 * fix: tests * fix: local tests
* Change publish directory to build/html in workflow Changed from gh-pages, which is the branch name. As of making this change the GitHub pages site at the rosettacommons domain was throwing a 404 error, it could not locate an index.html file. This is an attempt to fix that error. * Change publish directory for GitHub Pages Missed the underscore in front of build - apologies! * fix: doc deployment * fix: revert change to release and docs to deploy only when merging to production --------- Co-authored-by: ncorley <ncorley@uw.edu> Co-authored-by: Nathaniel Corley <nscorley@gmail.com>
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Nov 29, 2025
…ld (#34) Bugfix to tolerate CIF files with missing/inapplicable symbols in entity_id field
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I have ensured that all my commits follow angular commit message conventions.
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