SOTA audit fix: integrate cleanup_stale_profiles in daemon + update #12 status

- autonomous_daemon.py: call cleanup_stale_profiles() at startup (now actually integrated)
- issues.md: update #12 status to 'PARTIALLY INTEGRATED' (relaunch_chrome/load_credentials still need SurveyRunner integration)
- issues.md: fix AX-Tree-Wakeup claim (NOT implemented, requires private API)
- graphify-out/ updated via hook

Author: SIN-Agent

graphify-out/GRAPH_REPORT.md

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