[Auto-generated] Update dependencies (#204)

TEAM4-0 · dependabot[bot] · CasperWA · web-flow · commit bd94920a6b25 · 2024-02-01T11:08:42.000+01:00
Update dependencies in `pyproject.toml` (#200, #203) Update GH Actions: * Bump SINTEF/ci-cd from 2.7.1 to 2.7.2 (#201) Update `pre-commit` hooks. Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Casper Welzel Andersen <casper.w.andersen@sintef.no> Co-authored-by: Casper Welzel Andersen <43357585+CasperWA@users.noreply.github.com>
diff --git a/.github/workflows/cd_release.yml b/.github/workflows/cd_release.yml
@@ -8,7 +8,7 @@ on:
 jobs:
   publish-package-and-docs:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/cd_release.yml@v2.7.1
+    uses: SINTEF/ci-cd/.github/workflows/cd_release.yml@v2.7.2
     if: github.repository == 'SINTEF/oteapi-optimade' && startsWith(github.ref, 'refs/tags/v')
     with:
       # General
diff --git a/.github/workflows/ci_automerge_dependency_prs.yml b/.github/workflows/ci_automerge_dependency_prs.yml
@@ -7,7 +7,7 @@ on:
 jobs:
   update-dependencies-branch:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_automerge_prs.yml@v2.7.1
+    uses: SINTEF/ci-cd/.github/workflows/ci_automerge_prs.yml@v2.7.2
     if: github.repository_owner == 'SINTEF' && ( ( startsWith(github.event.pull_request.head.ref, 'dependabot/') && github.actor == 'dependabot[bot]' ) || ( github.event.pull_request.head.ref == 'ci/update-pyproject' && github.actor == 'TEAM4-0' ) )
     secrets:
       PAT: ${{ secrets.RELEASE_PAT }}
diff --git a/.github/workflows/ci_cd_updated_main.yml b/.github/workflows/ci_cd_updated_main.yml
@@ -7,7 +7,7 @@ on:
 jobs:
   update-deps-branch-and-docs:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_cd_updated_default_branch.yml@v2.7.1
+    uses: SINTEF/ci-cd/.github/workflows/ci_cd_updated_default_branch.yml@v2.7.2
     if: github.repository_owner == 'SINTEF'
     with:
       # General
diff --git a/.github/workflows/ci_check_dependencies.yml b/.github/workflows/ci_check_dependencies.yml
@@ -9,7 +9,7 @@ on:
 jobs:
   check-dependencies:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_check_pyproject_dependencies.yml@v2.7.1
+    uses: SINTEF/ci-cd/.github/workflows/ci_check_pyproject_dependencies.yml@v2.7.2
     if: github.repository_owner == 'SINTEF'
     with:
       git_username: "TEAM 4.0[bot]"
diff --git a/.github/workflows/ci_tests.yml b/.github/workflows/ci_tests.yml
@@ -10,7 +10,7 @@ on:
 jobs:
   basic-tests:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_tests.yml@v2.7.1
+    uses: SINTEF/ci-cd/.github/workflows/ci_tests.yml@v2.7.2
     with:
       # General setup
       install_extras: "[dev]"
diff --git a/.github/workflows/ci_update_dependencies.yml b/.github/workflows/ci_update_dependencies.yml
@@ -9,7 +9,7 @@ on:
 jobs:
   create-collected-pr:
     name: External
-    uses: SINTEF/ci-cd/.github/workflows/ci_update_dependencies.yml@v2.7.1
+    uses: SINTEF/ci-cd/.github/workflows/ci_update_dependencies.yml@v2.7.2
     if: github.repository_owner == 'SINTEF'
     with:
       # General
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -24,7 +24,7 @@ repos:
       args: [--py39-plus, --keep-runtime-typing]
 
   - repo: https://github.com/ambv/black
-    rev: 23.12.1
+    rev: 24.1.1
     hooks:
     - id: black
 
@@ -35,13 +35,13 @@ repos:
         additional_dependencies: [black]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.11
+    rev: v0.1.15
     hooks:
     - id: ruff
       args: ["--fix", "--exit-non-zero-on-fix", "--show-fixes"]
 
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.7.6
+    rev: 1.7.7
     hooks:
     - id: bandit
       args: ["-r"]
@@ -57,7 +57,7 @@ repos:
         - "pydantic<2"
 
   - repo: https://github.com/SINTEF/ci-cd
-    rev: v2.7.1
+    rev: v2.7.2
     hooks:
     - id: docs-api-reference
       args:
diff --git a/oteapi_optimade/__init__.py b/oteapi_optimade/__init__.py
@@ -5,6 +5,7 @@
 Authored by Casper Welzel Andersen, SINTEF, 2022
 Created from cookiecutter-oteapi-plugin, SINTEF, 2022
 """
+
 from __future__ import annotations
 
 __version__ = "0.4.2"
diff --git a/oteapi_optimade/dlite/parse.py b/oteapi_optimade/dlite/parse.py
@@ -1,4 +1,5 @@
 """OTEAPI strategy for parsing OPTIMADE structure resources to DLite instances."""
+
 from __future__ import annotations
 
 import logging
@@ -127,16 +128,20 @@ def get(
             # Currently, only "structures" entries are supported and handled
             if isinstance(session.optimade_response_object, StructureResponseMany):
                 structures = [
-                    Structure(entry)
-                    if isinstance(entry, dict)
-                    else Structure(entry.dict())
+                    (
+                        Structure(entry)
+                        if isinstance(entry, dict)
+                        else Structure(entry.dict())
+                    )
                     for entry in session.optimade_response_object.data
                 ]
             elif isinstance(session.optimade_response_object, StructureResponseOne):
                 structures = [
-                    Structure(session.optimade_response_object.data)
-                    if isinstance(session.optimade_response_object.data, dict)
-                    else Structure(session.optimade_response_object.data.dict())
+                    (
+                        Structure(session.optimade_response_object.data)
+                        if isinstance(session.optimade_response_object.data, dict)
+                        else Structure(session.optimade_response_object.data.dict())
+                    )
                 ]
             elif isinstance(session.optimade_response_object, Success):
                 if isinstance(session.optimade_response_object.data, dict):
@@ -147,9 +152,11 @@ def get(
                     ]
                 elif isinstance(session.optimade_response_object.data, list):
                     structures = [
-                        Structure(entry)
-                        if isinstance(entry, dict)
-                        else Structure(entry.dict())
+                        (
+                            Structure(entry)
+                            if isinstance(entry, dict)
+                            else Structure(entry.dict())
+                        )
                         for entry in session.optimade_response_object.data
                     ]
                 else:
@@ -289,9 +296,11 @@ def get(
                             "nelements": structure.attributes.nelements or 0,
                             "dimensionality": 3,
                             "nsites": structure.attributes.nsites or 0,
-                            "nspecies": len(structure.attributes.species)
-                            if structure.attributes.species
-                            else 0,
+                            "nspecies": (
+                                len(structure.attributes.species)
+                                if structure.attributes.species
+                                else 0
+                            ),
                             "nstructure_features": len(
                                 structure.attributes.structure_features
                             ),
diff --git a/oteapi_optimade/exceptions.py b/oteapi_optimade/exceptions.py
@@ -1,4 +1,5 @@
 """OTE-API OPTIMADE-specific Python exceptions."""
+
 from __future__ import annotations
 
 
diff --git a/oteapi_optimade/models/__init__.py b/oteapi_optimade/models/__init__.py
@@ -1,4 +1,5 @@
 """`oteapi_optimade.models` module - pydantic data models."""
+
 from __future__ import annotations
 
 from .strategies import (
diff --git a/oteapi_optimade/models/config.py b/oteapi_optimade/models/config.py
@@ -1,4 +1,5 @@
 """General OPTIMADE configuration models."""
+
 from __future__ import annotations
 
 from typing import Literal, Optional
diff --git a/oteapi_optimade/models/custom_types.py b/oteapi_optimade/models/custom_types.py
@@ -1,4 +1,5 @@
 """Custom "pydantic" types used in OTEAPI-OPTIMADE."""
+
 from __future__ import annotations
 
 import logging
diff --git a/oteapi_optimade/models/query.py b/oteapi_optimade/models/query.py
@@ -1,4 +1,5 @@
 """Data models related to OPTIMADE queries."""
+
 from __future__ import annotations
 
 from typing import Optional
diff --git a/oteapi_optimade/models/strategies/__init__.py b/oteapi_optimade/models/strategies/__init__.py
@@ -1,4 +1,5 @@
 """`oteapi_optimade.models` module - pydantic data models."""
+
 from __future__ import annotations
 
 from .filter import OPTIMADEFilterConfig, OPTIMADEFilterSession
diff --git a/oteapi_optimade/models/strategies/filter.py b/oteapi_optimade/models/strategies/filter.py
@@ -1,4 +1,5 @@
 """Models specific to the filter strategy."""
+
 from __future__ import annotations
 
 from typing import Any, Literal, Optional
diff --git a/oteapi_optimade/models/strategies/parse.py b/oteapi_optimade/models/strategies/parse.py
@@ -1,4 +1,5 @@
 """Models specific to the parse strategy."""
+
 from __future__ import annotations
 
 from typing import Any, Literal, Optional
diff --git a/oteapi_optimade/models/strategies/resource.py b/oteapi_optimade/models/strategies/resource.py
@@ -1,4 +1,5 @@
 """Models specific to the resource strategy."""
+
 from __future__ import annotations
 
 from typing import Any, Literal, Optional
diff --git a/oteapi_optimade/strategies/filter.py b/oteapi_optimade/strategies/filter.py
@@ -1,4 +1,5 @@
 """Demo filter strategy."""
+
 from __future__ import annotations
 
 import logging
diff --git a/oteapi_optimade/strategies/parse.py b/oteapi_optimade/strategies/parse.py
@@ -1,4 +1,5 @@
 """Demo strategy class for text/json."""
+
 from __future__ import annotations
 
 import json
diff --git a/oteapi_optimade/strategies/resource.py b/oteapi_optimade/strategies/resource.py
@@ -1,4 +1,5 @@
 """OPTIMADE resource strategy."""
+
 from __future__ import annotations
 
 import logging
@@ -257,32 +258,40 @@ def get(
             )
         elif isinstance(optimade_response, ReferenceResponseMany):
             optimade_resources = [
-                Reference(entry).as_dict
-                if isinstance(entry, dict)
-                else Reference(entry.dict()).as_dict
+                (
+                    Reference(entry).as_dict
+                    if isinstance(entry, dict)
+                    else Reference(entry.dict()).as_dict
+                )
                 for entry in optimade_response.data
             ]
             session.optimade_resource_model = f"{Reference.__module__}:Reference"
         elif isinstance(optimade_response, ReferenceResponseOne):
             optimade_resources = [
-                Reference(optimade_response.data).as_dict
-                if isinstance(optimade_response.data, dict)
-                else Reference(optimade_response.data.dict()).as_dict
+                (
+                    Reference(optimade_response.data).as_dict
+                    if isinstance(optimade_response.data, dict)
+                    else Reference(optimade_response.data.dict()).as_dict
+                )
             ]
             session.optimade_resource_model = f"{Reference.__module__}:Reference"
         elif isinstance(optimade_response, StructureResponseMany):
             optimade_resources = [
-                Structure(entry).as_dict
-                if isinstance(entry, dict)
-                else Structure(entry.dict()).as_dict
+                (
+                    Structure(entry).as_dict
+                    if isinstance(entry, dict)
+                    else Structure(entry.dict()).as_dict
+                )
                 for entry in optimade_response.data
             ]
             session.optimade_resource_model = f"{Structure.__module__}:Structure"
         elif isinstance(optimade_response, StructureResponseOne):
             optimade_resources = [
-                Structure(optimade_response.data).as_dict
-                if isinstance(optimade_response.data, dict)
-                else Structure(optimade_response.data.dict()).as_dict
+                (
+                    Structure(optimade_response.data).as_dict
+                    if isinstance(optimade_response.data, dict)
+                    else Structure(optimade_response.data.dict()).as_dict
+                )
             ]
             session.optimade_resource_model = f"{Structure.__module__}:Structure"
         else:
diff --git a/oteapi_optimade/utils.py b/oteapi_optimade/utils.py
@@ -1,4 +1,5 @@
 """Utility functions to be used in OTEAPI OPTIMADE."""
+
 from __future__ import annotations
 
 from collections.abc import Iterable
diff --git a/pyproject.toml b/pyproject.toml
@@ -48,7 +48,7 @@ doc = [
     "oteapi-optimade[examples]",
 ]
 test = [
-    "pytest ~=7.4",
+    "pytest ~=8.0",
     "pytest-cov ~=4.1",
     "pyyaml ~=6.0",
     "requests-mock ~=1.11",
diff --git a/tests/conftest.py b/tests/conftest.py
@@ -1,4 +1,5 @@
 """Pytest fixtures and configuration."""
+
 from __future__ import annotations
 
 from typing import TYPE_CHECKING
diff --git a/tests/dlite/test_parse.py b/tests/dlite/test_parse.py
@@ -1,4 +1,5 @@
 """Test `oteapi_optimade.dlite.parse` module."""
+
 from __future__ import annotations
 
 from typing import TYPE_CHECKING
diff --git a/tests/strategies/test_resource.py b/tests/strategies/test_resource.py
@@ -1,6 +1,7 @@
 """Test `oteapi_optimade.strategies.resource` module.
 Specifically the `OPTIMADEResourceStrategy` class.
 """
+
 from __future__ import annotations
 
 from typing import TYPE_CHECKING

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`"""OTE-API OPTIMADE-specific Python exceptions."""`
	`2`	`+`
`2`	`3`	`from __future__ import annotations`
`3`	`4`
`4`	`5`