Sync code from local; bump version to 1.0.0rc2

Author: cywkmc21

.gitignore

@@ -113,3 +113,4 @@ random_*/
 *.png
 !docs/**/*.png
 test_mace_overnight.py
+Tutorials/

README.md

@@ -749,7 +749,7 @@ AmorphGen/
 ├── .github/workflows/
 │   └── test.yml                    ← CI (pytest on 3.10/3.11/3.12)
 ├── amorphgen/
-│   ├── __init__.py                 ← v1.0.0
+│   ├── __init__.py                 ← v1.0.0rc2
 │   ├── cli.py                      ← CLI entry point (amorphgen command)
 │   ├── configs/
 │   │   ├── default_config.py       ← all default parameters

amorphgen/__init__.py

@@ -24,7 +24,7 @@
 from .utils.convert import convert
 from .utils.common import extract_snapshots
 
-__version__ = "1.0.0"
+__version__ = "1.0.0rc2"
 __author__ = "Chaiyawat Kaewmeechai"
 
 __all__ = [

docs/conf.py

@@ -5,8 +5,8 @@
 project = "AmorphGen"
 copyright = "2026, Chaiyawat Kaewmeechai"
 author = "Chaiyawat Kaewmeechai"
-version = "1.0.0"
-release = "1.0.0"
+version = "1.0.0rc2"
+release = "1.0.0rc2"
 
 # -- General configuration ---------------------------------------------------
 extensions = [

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "amorphgen"
-version = "1.0.0rc1"
+version = "1.0.0rc2"
 description = "Amorphous structure generation via melt-quench MD and random placement"
 readme = "README.md"
 license = {text = "MIT"}