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Fixes issue where database export was failing #13909

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Merged
roldy merged 1 commit into from
Apr 22, 2026
Merged

Fixes issue where database export was failing #13909

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14 changes: 10 additions & 4 deletions ...as-backend/src/main/java/de/symeda/sormas/backend/importexport/DatabaseExportService.java
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Original file line number Diff line number Diff line change
Expand Up @@ -42,9 +42,11 @@

import de.symeda.sormas.api.feature.FeatureConfigurationDto;
import de.symeda.sormas.api.importexport.DatabaseTable;
import de.symeda.sormas.api.therapy.Drug;
import de.symeda.sormas.backend.action.Action;
import de.symeda.sormas.backend.activityascase.ActivityAsCase;
import de.symeda.sormas.backend.adverseeventsfollowingimmunization.entity.AdverseEvents;
import de.symeda.sormas.backend.adverseeventsfollowingimmunization.entity.Aefi;
import de.symeda.sormas.backend.adverseeventsfollowingimmunization.entity.AefiInvestigation;
import de.symeda.sormas.backend.campaign.Campaign;
import de.symeda.sormas.backend.campaign.data.CampaignFormData;
import de.symeda.sormas.backend.campaign.diagram.CampaignDiagramDefinition;
Expand Down Expand Up @@ -119,15 +121,16 @@

/**
* Exporting data directly from the PostgreSQL database with COPY commands as .csv files.
*
*
* @author Stefan Kock
*/
@Stateless
@LocalBean
public class DatabaseExportService {

private static final String COPY_SINGLE_TABLE = "COPY (SELECT * FROM %s) TO STDOUT WITH (FORMAT CSV, DELIMITER '%s', HEADER)";
public static final String COUNT_TABLE_COLUMNS = "SELECT COUNT(column_name) FROM information_schema.columns WHERE table_name=:tableName";
public static final String COUNT_TABLE_COLUMNS =
"SELECT COUNT(column_name) FROM information_schema.columns WHERE table_name=CAST(:tableName AS text)";

static final Map<DatabaseTable, String> EXPORT_CONFIGS = new LinkedHashMap<>();

Expand Down Expand Up @@ -159,6 +162,9 @@ public class DatabaseExportService {
EXPORT_CONFIGS.put(DatabaseTable.TRAVEL_ENTRIES, TravelEntry.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.IMMUNIZATIONS, Immunization.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.VACCINATIONS, Vaccination.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.ADVERSE_EVENTS_FOLLOWING_IMMUNIZATIONS, Aefi.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.ADVERSE_EVENTS_FOLLOWING_IMMUNIZATION_INVESTIGATIONS, AefiInvestigation.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.ADVERSE_EVENTS, AdverseEvents.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.SAMPLES, Sample.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.PATHOGEN_TESTS, PathogenTest.TABLE_NAME);
EXPORT_CONFIGS.put(DatabaseTable.ADDITIONAL_TESTS, AdditionalTest.TABLE_NAME);
Expand Down Expand Up @@ -280,7 +286,7 @@ private void addDataRows(DatabaseTable databaseTable, String tableName, Writer w

/**
* Run an export command and write the result directly into a Writer
*
*
* @param writer
* @param sql
* Actual native sql command to copy data to CSV.
Expand Down
4 changes: 0 additions & 4 deletions ...ackend/src/test/java/de/symeda/sormas/backend/importexport/DatabaseExportServiceTest.java
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Expand Up @@ -23,7 +23,6 @@
import com.tngtech.archunit.core.importer.ClassFileImporter;

import de.symeda.sormas.api.importexport.DatabaseTable;
import de.symeda.sormas.backend.adverseeventsfollowingimmunization.entity.AdverseEvents;
import de.symeda.sormas.backend.adverseeventsfollowingimmunization.entity.Aefi;
import de.symeda.sormas.backend.adverseeventsfollowingimmunization.entity.AefiInvestigation;
import de.symeda.sormas.backend.docgeneration.DocumentTemplate;
Expand Down Expand Up @@ -75,9 +74,6 @@ public void testGetConfigFullyDefined() {
Environment.class,
EnvironmentSample.class,
SelfReport.class,
Aefi.class,
AdverseEvents.class,
AefiInvestigation.class,
DocumentTemplate.class,
Survey.class,
SurveyToken.class,
Expand Down
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