Reverting the partial commit

[KarnaiahPesula]

Fixes #
Reverting the partial commit

Summary by CodeRabbit

• Bug Fixes

  • Corrected the display label for a field from "Species" to "Specie"

• Changes

  • Removed Shigellosis from the list of available diseases in the system. This affects disease selection throughout the application
  • Updated sample material disease associations to remove all references to Shigellosis

[coderabbitai]

📝 Walkthrough

Walkthrough

This PR removes the SHIGELLOSIS disease constant from the Disease enum and updates all associated sample material disease mappings to no longer reference it. A caption property label is also corrected from "Species" to "Specie".

Changes

SHIGELLOSIS Removal and Caption Correction

Layer / File(s)	Summary
Disease Enum Removal sormas-api/src/main/java/de/symeda/sormas/api/Disease.java	SHIGELLOSIS enum constant removed from between CRYPTOSPORIDIOSIS and SALMONELLOSIS.
Sample Material Disease Associations sormas-api/src/main/java/de/symeda/sormas/api/sample/SampleMaterial.java	@Diseases annotations for eight enum constants (BRAIN_TISSUE, OP_ASPIRATE, NP_ASPIRATE, AMNIOTIC_FLUID, CLINICAL_SAMPLE, PERITONEAL_FLUID, and preceding constants) are updated to remove Disease.SHIGELLOSIS from their disease-to-sample mappings.
UI Label Correction sormas-api/src/main/resources/captions.properties	PathogenTest.specie caption text changed from Species to Specie.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related issues

• #13927: Directly related as both target the SHIGELLOSIS enum constant in Disease; this PR removes it while that issue tracks its properties.

Possibly related PRs

• SORMAS-Foundation/SORMAS-Project#13582: Both modify Disease enum and @Diseases annotations in SampleMaterial.
• SORMAS-Foundation/SORMAS-Project#13889: Both change disease-related annotations in SampleMaterial and modify the Disease enum.
• SORMAS-Foundation/SORMAS-Project#13683: Both modify Disease enum constant definitions.

Suggested reviewers

• raulbob
• obinna-h-n

Poem

🐰 A sickness cast aside with care,
No more Shigellosis anywhere!
Sample maps now clean and bright,
Captions spelled just right. ✨

🚥 Pre-merge checks | ✅ 2 | ❌ 3

❌ Failed checks (2 warnings, 1 inconclusive)

Check name	Status	Explanation	Resolution
Description check	⚠️ Warning	The PR description is incomplete; it contains only the template header and a single line repeating the title without the required issue number and detailed context.	Complete the description by specifying the issue number after 'Fixes #' and provide details about what changes are being reverted and why.
Docstring Coverage	⚠️ Warning	Docstring coverage is 0.00% which is insufficient. The required threshold is 80.00%.	Write docstrings for the functions missing them to satisfy the coverage threshold.
Title check	❓ Inconclusive	The title 'Reverting the partial commit' is vague and generic, lacking specificity about what partial commit is being reverted or what changes are involved.	Revise the title to clearly specify what is being reverted (e.g., 'Revert removal of SHIGELLOSIS disease and related changes') for better clarity.

✅ Passed checks (2 passed)

Check name	Status	Explanation
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

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✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch bugfix-reverting-to-development

Warning

Review ran into problems

🔥 Problems

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[coderabbitai]

Actionable comments posted: 1

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@sormas-api/src/main/resources/captions.properties`:
- Line 1959: The caption key PathogenTest.specie has a typo in its value; update
the properties entry so the user-facing label reads "Species" instead of
"Specie" by changing the value for PathogenTest.specie to "Species" (also search
for other uses of PathogenTest.specie to update any duplicates or translations
to maintain consistency).

🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

• Push a commit to this branch (recommended)
• Create a new PR with the fixes

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 936bed53-5622-44d6-ae42-bdda0351cca3

📥 Commits

Reviewing files that changed from the base of the PR and between 1dc509f and f65279c.

📒 Files selected for processing (3)

• sormas-api/src/main/java/de/symeda/sormas/api/Disease.java
• sormas-api/src/main/java/de/symeda/sormas/api/sample/SampleMaterial.java
• sormas-api/src/main/resources/captions.properties

💤 Files with no reviewable changes (1)

• sormas-api/src/main/java/de/symeda/sormas/api/Disease.java

[coderabbitai]

⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Fix caption typo: use “Species” instead of “Specie”

This change introduces a user-facing wording regression. In this context, the correct label is “Species”.

Suggested fix

-PathogenTest.specie=Specie
+PathogenTest.specie=Species

📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change

	PathogenTest.specie=Specie
	PathogenTest.specie=Species

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@sormas-api/src/main/resources/captions.properties` at line 1959, The caption
key PathogenTest.specie has a typo in its value; update the properties entry so
the user-facing label reads "Species" instead of "Specie" by changing the value
for PathogenTest.specie to "Species" (also search for other uses of
PathogenTest.specie to update any duplicates or translations to maintain
consistency).