Sasview database#106

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summerhenson wants to merge 1148 commits into

refactor_24from

sasview-database

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Commits on Mar 12, 2026

Test GET dataset with metadata

summerhenson
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DrPaulSharp
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Add comments to serializer classes

summerhenson
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Fix serialization of DataSet with files

summerhenson
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Check access to files in a dataset

summerhenson
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Test DataSet creation with files

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Filter files in dataset by access

summerhenson
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Test loading dataset with files

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Start session tests

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Copy session is_public value to composing datasets

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Test listing sessions

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Fix bugs in DataSet creation nested in a Session

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Include username and authentication status in all post responses

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Disallow creating private sessions without an owner

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Test Session post method

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Use the right serializer for sessions and return id with get

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Test get method for individual sessions

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Test put method for individual sessions

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Test Session delete method

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Propagate access changes from session to composing datasets

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Test Session access management

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Return current_user as username not id

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Comments of session testing

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Add field for history references to Quantity

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Serialization for Quantity variable references

summerhenson
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Change serialization of QuantityHistory references to match API

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Serialize Quantity operation_tree and references as history

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Remove infinite serialization loop of quantities and histories

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Separate model for history reference quantities

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Test references in quantity history

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Add tests to test updating a DataSet

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Propagate update to session is_public to datasets

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PublishedState serialization and minor serializer create method simplifications

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Outline of PublishedState views

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PublishedState list method

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Serializer to restrict PublishedState update to published field

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Post method for PublishedState

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Get method for single PublishedState

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Update method for PublishedState

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Delete method for PublishedState

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Planning for PublishedState testing

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PublishedState urls

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Test listing published states

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Fix bugs in PublishedState creation

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Check that session doesn't already have a published state

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Test creating a published state

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Add fields to PublishedState get response

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Test individual PublishedState get method

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Test PublishedState update method

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Test PublishedState delete method

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Session creation example script

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Add models to admin interface

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Account for json strings in post requests

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Enable session-based authentication

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Comments for PublishedState tests

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Test that metadata is required for dataset creation

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Minor changes suggested by Jeff

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Nested PublishedState update in Session

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Test nested PublishedState

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Test listing published states by username

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Deserialization methods for sasdata structures

summerhenson
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Data sketch

lucas-wilkins
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Some units

lucas-wilkins
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Work towards outline

lucas-wilkins
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Units now available and grouped

lucas-wilkins
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More units

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one d in shadow

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Fixed density units

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Use alias list to remove duplicates

lucas-wilkins
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More units, towards formatting

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Units and accessors draft ready to begin tests on

lucas-wilkins
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Some tests

lucas-wilkins
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SI unit module

lucas-wilkins
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si unit list

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More tests, added names

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More units

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Notes

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Notes

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start of metadata structure

lucas-wilkins
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Metadata work, and unit groups

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More metadata stuff

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Named units in unit groups

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More metadata, added absolute temperature stuff

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Metadata objects complete for now

lucas-wilkins
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Percent test and fix

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Work towards new data object

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Basic reading

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Work towards structuring inputs with uncertainties

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Work on uncertainty propagation

lucas-wilkins
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Added some code to enable test driven development.

James Crake-Merani
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Some minor changes to stop my editor from crying.

James Crake-Merani
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Pass in the dimensions so this code is correct.

James Crake-Merani
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Wrote some tests ahead.

James Crake-Merani
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Parse using a slant as well.

James Crake-Merani
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Found a regex for splitting up the string.

James Crake-Merani
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Implemented the parse_single_unit function.

James Crake-Merani
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Use two functions for parsing.

James Crake-Merani
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Use list comprehension to get potential symbols.

James Crake-Merani
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parse unit strs function.

James Crake-Merani
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Created a function to pass in a stack of units.

James Crake-Merani
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Multiply dimensions function.

James Crake-Merani
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Use the new multiply function.

James Crake-Merani
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Nvm I'm blind; there already was a multiply method.

James Crake-Merani
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Parse in a whole unit.

James Crake-Merani
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I still need this multply for parse_unit_stack.

James Crake-Merani
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System for combining units.

James Crake-Merani
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Removed not implemented comment.

James Crake-Merani
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Parse in a named unit.

James Crake-Merani
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Avoid mutating state.

James Crake-Merani
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Replace the unit on the stack.

James Crake-Merani
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Fixed the logic around combining units.

James Crake-Merani
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Parse_name_unit can take in an already parsed unit.

James Crake-Merani
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Added a todo comment.

James Crake-Merani
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Take a unit from the command line.

James Crake-Merani
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Added whitespace on input.

James Crake-Merani
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Fixed typo.

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Only multiply scale by 1, or -1.

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Look for slashes in the string.

James Crake-Merani
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Got fraction units working as well :)

James Crake-Merani
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Configure how ambiguities are dealt with.

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Only break if we have found a symbol.

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Take in longest unit across the whole file.

James Crake-Merani
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Take in a unit group in parse_singe_unit.

James Crake-Merani
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Parse a unit from a specific group.

James Crake-Merani
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Equivalent function for from group.

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Is none not equal to none.

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Removed old TODO comment.

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Catch key errors.

James Crake-Merani
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Expand the try block.

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Removed an old todo comment.

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New unit test in pytest.

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Raise an exception if the unit can't be parsed.

James Crake-Merani
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Added some unit tests that should error.

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Created a regex validator for the unit str.

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Throw an exception if the validation fails.

James Crake-Merani
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Update unit test to reflect new error.

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Unit test for what I was originally testing for.

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Added more tests for slants.

James Crake-Merani
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Slants should be valid unit strings as well.

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Parse in newton as its defined value.

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Remove the old testing file.

James Crake-Merani
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This function isn't being used.

James Crake-Merani
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Added to the doc string about unit groups.

James Crake-Merani
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Moved the unit group to first.

James Crake-Merani
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Small rename.

James Crake-Merani
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Use destructuring to make this a bit cleaner.

James Crake-Merani
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Fixed function call.

James Crake-Merani
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Added some docstrings.

James Crake-Merani
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Refactored parse named unit so it just takes one arg.

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Removed old todo comment.

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Added some docstrings.

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Stop linter from moaning.

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Accept spaces in the unit str.

James Crake-Merani
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Split by dots as well.

James Crake-Merani
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Work on adding uncertainties, adding non-integer powers

lucas-wilkins
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Integer unit powers now work

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Quantities now have histories, and variance could work, needs testing though

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Quantities ready for testing

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Quantity combining seems to work

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Fixed error in helper function

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Fixed error formatting bug

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Tests for error propagation

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More aliases for units

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Made file for target object for metadata

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Main data reading for HDF5 prototype

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integrating the units stuff

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Parsing of units in HDF5 reader

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Fixed moles potentially

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Unit name fixes

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Filling in some of the working for the accessors

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Fixed bug where ohms, and angstroms were forbidden

James Crake-Merani
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Accept the ^ char but don't do anything with it.

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Connecting metadata

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Remove target data object attempt

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Accessor changes

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Merge tidying

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Metadata linked up, just not pointing in the right place right now

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Added some debugging info to the summary

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Debugging metadata

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Better reference methods

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Added matrix operations, needs tests

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Numpy import

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Added __matmul__ and __rmatmul__ to quantities

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Entrypoint for rebinning

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Some better commenting on Quantity

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Work towards rebinning methods

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Zeroth order rebinning sketch

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First order rebinning

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Rebinning tests and extensions

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Work towards fraction binning

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Mesh merging and some refactoring

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Triangulated mesh

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Mesh merging works

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Implementation of Rebinner base class

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Work towards demo

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Voronoi mesh edges and ordering

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It works, needs benchmarking

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Much faster assignment/merge method

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Significantly faster edge crossing algorithm

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Demo

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Notes

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No error

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Interpolation stuff

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Moving some things around

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Move math and operations into quantity

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Fixes from move

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Tensor product implementation

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Extended transpose, and tensor tests

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Encodings for numerical values

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Tidying up

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Work on sparse matrix serialisation

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Is anyone capable of putting sensible things in HDF5 files? Corrections for ineptitudes.

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Line endings :)

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Updated final line endings

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Fix test import

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Work on tests for sparse matrix encoding

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Fix tests

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Disable machine specific mesh test for MacOS

lucas-wilkins
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Make import paths absolute.

jamescrake-merani
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Fix import of _units_base by _build_tables.py

rprospero
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Add latex symbols to units which need them

rprospero
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Started with the basic ascii reader func signature

James Crake-Merani
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Fixed import errors.

James Crake-Merani
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Moving internal metadata to sasdata.

James Crake-Merani
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A very basic skeleton of the trend object.

James Crake-Merani
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Implemented equality based on the hash.

James Crake-Merani
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Wrote a test for the trend.

James Crake-Merani
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Use full function name here.

jamescrake-merani
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Add with standard error for quantities.

jamescrake-merani
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Wrote a test for 1d data.

jamescrake-merani
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Bring guess into sasdata.

James Crake-Merani
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Bring default logic from SasView here.

James Crake-Merani
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Wrote a test for the ASCII reader.

James Crake-Merani
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Create test option for displaying diagnostic plots

rprospero
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More interpolation test into main test directory

rprospero
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Add tests for dataset

rprospero
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Parse source

rprospero
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Instrument is a data class

rprospero
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Metadata is a dataclass

rprospero
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Start adding official tests for xml file loading

rprospero
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Better work at handling comments

rprospero
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More tests of xml

rprospero
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Mark weird units, but continue parsing

rprospero
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Add last xml test

rprospero
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Fix parsing of BeamSize

rprospero
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Skeleton framework for SESANS data

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Multiple SESANS files in reader test

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SESANS metadata as a process, not an aperture

rprospero
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More tests for quantities

rprospero
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Applies auto fixes for ruff rule F401
DrPaulSharp
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[pre-commit.ci lite] apply automatic fixes for ruff linting errors
pre-commit-ci-lite[bot]
authored

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Commits

Commits on Mar 12, 2026