Merge pull request sequence-toolbox#280 from sequence-toolbox/migrate_to_uv

Migrate to uv

Author: hayekr

.github/workflows/development.yml

@@ -6,7 +6,6 @@ on:
   workflow_dispatch:
 
 env:
-  PYTHON_VERSION: '3.x'
   PROD_PYPI_NAME: 'sequence'
   TEST_PYPI_NAME: 'ssequence'
 
@@ -25,22 +24,13 @@ jobs:
 
     steps:
       - name: Checkout RnD branch
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
-          persist-credentials: 'true'
+          persist-credentials: true
           ref: RnD
 
-      - name: Setup Python
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ env.PYTHON_VERSION }}
-
-      - name: Install pypa/build
-        run: >-
-          python3 -m
-          pip install 
-          build
-          --user
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
 
       - name: Generate development version
         id: version
@@ -67,7 +57,7 @@ jobs:
           fi
 
       - name: Build wheel and tarball
-        run: python3 -m build
+        run: uv build
 
       - name: Store build as an artifact
         uses: actions/upload-artifact@v4
@@ -101,17 +91,18 @@ jobs:
 
     permissions:
       id-token: write
+      attestations: write
 
     steps:
       - name: Download the builds
         uses: actions/download-artifact@v4
         with:
           name: build-RnD-${{ matrix.target }}-${{ needs.build-rnd.outputs.dev_version }}
           path: dist/
-
       - name: Publish dist
         uses: pypa/gh-action-pypi-publish@release/v1
         with:
+          attestations: true
           repository-url: ${{ matrix.pypi_url || '' }}
           skip-existing: true
           verbose: true

.github/workflows/publish.yml

@@ -13,21 +13,15 @@ jobs:
     runs-on: ubuntu-latest
     if: github.event_name == 'release' && github.repository == 'sequence-toolbox/SeQUeNCe'
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
-          persist-credentials: 'true'
-      - name: Setup Python
-        uses: actions/setup-python@v6
+          persist-credentials: true
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version: '3.x'
-      - name: Install pypa/build
-        run: >-
-          python3 -m
-          pip install 
-          build
-          --user
+          enable-cache: true
       - name: Build wheel and tarball
-        run: python3 -m build
+        run: uv build
       - name: Store dist as an artifact
         uses: actions/upload-artifact@v4
         with:
@@ -39,24 +33,18 @@ jobs:
     runs-on: ubuntu-latest
     if: github.event_name == 'push' && github.repository == 'sequence-toolbox/SeQUeNCe'
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
-          persist-credentials: 'true'
-      - name: Setup Python
-        uses: actions/setup-python@v6
+          persist-credentials: true
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version: '3.x'
-      - name: Install pypa/build
-        run: >-
-          python3 -m
-          pip install 
-          build
-          --user
+          enable-cache: true
       - name: Modify package name for TestPyPI
         run: |
           sed -i 's/^name = "sequence"/name = "ssequence"/' pyproject.toml
       - name: Build wheel and tarball for test
-        run: python3 -m build
+        run: uv build
       - name: Store test dist as an artifact
         uses: actions/upload-artifact@v4
         with:
@@ -106,5 +94,6 @@ jobs:
       - name: Publish dist to TestPyPI
         uses: pypa/gh-action-pypi-publish@release/v1
         with:
+          attestations: true
           repository-url: https://test.pypi.org/legacy/
           skip-existing: true

.github/workflows/validation.yml

@@ -14,22 +14,23 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.11', '3.12', '3.13']
+        python-version:
+          - "3.11"
+          - "3.12"
+          - "3.13"
+          - "3.14"
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
 
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+    - name: Install uv and set py version
+      uses: astral-sh/setup-uv@v7
       with:
         python-version: ${{ matrix.python-version }}
+        enable-cache: true
 
-    - name: Install dependencies
-      run: |
-        pip install pytest
-        make setup
-        make install
+    - name: Install project
+      run: uv sync --locked --all-extras --dev
 
-    - name: Test with pytest
-      run: |
-        make test
+    - name: Run tests
+      run: uv run pytest tests

CHANGELOG.md

@@ -6,6 +6,18 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 
+## [0.8.3] - 2025-12-11
+### Added
+- Add support for Python 3.14
+- A new function `read_version_from_pyproject()`. Don't need to update the version number 0.x.x at multiple locations anymore
+
+### Changed
+- Moves the build-backend from legacy python to uv. More speed, more verbose useful errors, no more specifying modules in pyproject, dependency locks
+
+### Fixed
+- A minor bug in `gui.py`
+
+
 ## [0.8.2] - 2025-11-21
 ### Added
 - A new state `PURIFIED` in `MemoryInfo` is introduced to enable the new purify strategy `once`, i.e. only purify one time. The previous existing stragety is renamed to `until_target`, i.e., keep purifing until reaching the target fidelity.

docs/source/conf.py

@@ -12,7 +12,9 @@
 #
 import os
 import sys
+
 sys.path.insert(0, os.path.abspath('../..'))
+from sequence import read_version_from_pyproject
 
 
 # -- Project information -----------------------------------------------------
@@ -21,8 +23,8 @@
 copyright = '2020-2025'
 author = 'Xiaoliang Wu, Joaquin Chung, Alexander Kolar, Eugene Wang, Tian Zhong, Rajkumar Kettimuthu, Martin Suchara'
 
-# The full version, including alpha/beta/rc tags
-release = '0.8.2'
+# The full version, including alpha/beta/rc tags. Keep single source of truth in pyproject.
+version = release = read_version_from_pyproject()
 
 
 # -- General configuration ---------------------------------------------------

pyproject.toml

@@ -1,31 +1,51 @@
 [project]
 name = "sequence"
-version = "0.8.2"
+version = "0.8.3"
 authors = [
     { name = "Xiaoliang Wu, Joaquin Chung, Alexander Kolar, Alexander Kiefer, Eugene Wang, Tian Zhong, Rajkumar Kettimuthu, Martin Suchara, Robert Hayek, Ansh Singal, Caitao Zhan", email = "czhan@anl.gov" }
 ]
 maintainers = [
-    { name = "Caitao Zhan", email = "czhan@anl.gov" }
+    { name = "Caitao Zhan", email = "czhan@anl.gov" },
+    { name = "Robert Hayek", email = "rhayek@anl.gov" }
 ]
 description = "Simulator of QUantum Network Communication (SeQUeNCe) is an open-source tool that allows modeling of quantum networks including photonic network components, control protocols, and applications."
 readme = "README.md"
-requires-python = ">=3.11, <3.14"
+requires-python = ">=3.11, <3.15"
 classifiers = [
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
-    "Programming Language :: Python :: 3.13"
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14"
 ]
-dynamic = ["dependencies"]
 keywords = ["quantum", "network", "discrete", "event", "simulator"]
+dependencies = [
+    "dash>=3.3.0",
+    "dash-bootstrap-components>=2.0.4",
+    "dash-core-components>=2.0.0",
+    "dash-cytoscape>=1.0.2",
+    "dash-html-components>=2.0.0",
+    "dash-table>=5.0.0",
+    "gmpy2>=2.2.2",
+    "ipywidgets>=8.1.8",
+    "jupyterlab>=4.5.0",
+    "matplotlib>=3.10.7",
+    "networkx>=3.6.1",
+    "numpy>=2.3.5",
+    "pandas>=2.3.3",
+    "plotly>=6.5.0",
+    "pytest>=9.0.2",
+    "qutip>=5.2.2",
+    "qutip-qip>=0.4.1",
+    "scipy>=1.16.3",
+    "tqdm>=4.67.1",
+]
 
-[tool.setuptools.dynamic]
-dependencies = { file = ["requirements.txt"] }
+[build-system]
+requires = ["uv_build>=0.9.17,<0.10.0"]
+build-backend = "uv_build"
 
-[tool.setuptools]
-packages = ['sequence', 'sequence.app', 'sequence.kernel', 'sequence.components', 'sequence.network_management',
-            'sequence.entanglement_management', 'sequence.qkd', 'sequence.resource_management', 'sequence.topology',
-            'sequence.utils', 'sequence.gui', 'sequence.qlan', 'sequence.topology.qlan',
-            'sequence.entanglement_management.generation', 'sequence.entanglement_management.purification']
+[tool.uv.build-backend]
+module-root = ""
 
 [tool.setuptools.package-data]
 sequence = ["gui/user_templates.json", "gui/default_params.json", "gui/starlight.json"]

requirements.txt

@@ -1,7 +1,27 @@
+from pathlib import Path
+
 __all__ = ['app', 'components', 'entanglement_management', 'kernel', 'network_management', 'qkd', 'resource_management',
-           'topology', 'utils', 'message', 'protocol', 'gui', 'qlan']
+           'topology', 'utils', 'message', 'protocol', 'gui', 'qlan', 'read_version_from_pyproject']
+
+
+def read_version_from_pyproject() -> str:
+    pyproject = Path(__file__).resolve().parent.parent / "pyproject.toml"
+    if not pyproject.exists():
+        return "unknown"
+    try:
+        import tomllib
+    except Exception:
+        return "unknown"
+
+    try:
+        with pyproject.open("rb") as f:
+            return tomllib.load(f)["project"]["version"]
+    except Exception:
+        return "unknown"
+
+
+__version__ = read_version_from_pyproject()
 
-__version__ = '0.8.2'
 
 def __dir__():
-    return sorted(__all__)
+    return sorted(__all__)