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2823 lines (2822 loc) · 217 KB
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%CDPlusPlus_Builder_Version_1.0.0
#include(PNTModel.inc)
[top]
components : particle
[particle]
type : cell
dim : (30,30,5)
delay : transport
defaultDelayTime : 10
border : wrapped
neighbors : particle(-3,0,0)
neighbors : particle(-2,-1,0) particle(-2,0,0) particle(-2,1,0)
neighbors : particle(-1,-2,0) particle(-1,-1,0) particle(-1,0,0) particle(-1,1,0) particle(-1,2,0)
neighbors : particle(0,-3,0) particle(0,-2,0) particle(0,-1,0) particle(0,0,0) particle(0,1,0) particle(0,2,0) particle(0,3,0)
neighbors : particle(1,-2,0) particle(1,-1,0) particle(1,0,0) particle(1,1,0) particle(1,2,0)
neighbors : particle(2,-1,0) particle(2,0,0) particle(2,1,0)
neighbors : particle(3,0,0)
neighbors : particle(-2,0,1)
neighbors : particle(-1,-1,1) particle(-1,0,1) particle(-1,1,1)
neighbors : particle(0,-2,1) particle(0,-1,1) particle(0,0,1) particle(0,1,1) particle(0,2,1)
neighbors : particle(1,-1,1) particle(1,0,1) particle(1,1,1)
neighbors : particle(2,0,1)
neighbors : particle(-2,0,2)
neighbors : particle(-1,-1,2) particle(-1,0,2) particle(-1,1,2)
neighbors : particle(0,-2,2) particle(0,-1,2) particle(0,0,2) particle(0,1,2) particle(0,2,2)
neighbors : particle(1,-1,2) particle(1,0,2) particle(1,1,2)
neighbors : particle(2,0,2)
neighbors : particle(-2,0,3)
neighbors : particle(-1,-1,3) particle(-1,0,3) particle(-1,1,3)
neighbors : particle(0,-2,3) particle(0,-1,3) particle(0,0,3) particle(0,1,3) particle(0,2,3)
neighbors : particle(1,-1,3) particle(1,0,3) particle(1,1,3)
neighbors : particle(2,0,3)
neighbors : particle(-2,0,4)
neighbors : particle(-1,-1,4) particle(-1,0,4) particle(-1,1,4)
neighbors : particle(0,-2,4) particle(0,-1,4) particle(0,0,4) particle(0,1,4) particle(0,2,4)
neighbors : particle(1,-1,4) particle(1,0,4) particle(1,1,4)
neighbors : particle(2,0,4)
initialvalue : 0
initialCellsValue : PNTModel30by30.val
localtransition : move-rule
[move-rule]
%
% Rules for wall colour.
%
% Set wall to yellow when action potential is occurring.
%
rule : 8 10 { #macro(CellIsInTopWallIncCorners) and #macro(DuringActionPotential) }
rule : 8 10 { #macro(CellIsInLeftWallNotIncCorners) and #macro(DuringActionPotential) }
rule : 8 10 { #macro(CellIsInRightWallNotIncCorners) and #macro(DuringActionPotential) }
rule : 8 10 { #macro(CellIsInBottomWallIncCorners) and #macro(DuringActionPotential) }
%
% Set wall to black when action potential is not occurring.
%
rule : 5 10 { #macro(CellIsInTopWallIncCorners) and #macro(NotDuringActionPotential) }
rule : 5 10 { #macro(CellIsInLeftWallNotIncCorners) and #macro(NotDuringActionPotential) }
rule : 5 10 { #macro(CellIsInRightWallNotIncCorners) and #macro(NotDuringActionPotential) }
rule : 5 10 { #macro(CellIsInBottomWallIncCorners) and #macro(NotDuringActionPotential) }
%
% Rules for calcium ion channel colour.
%
% Set calcium ion channel colour to closed value.
%
rule : 7 10 { #macro(CellIsInCaIonChannel) and #macro(CaIonChannelsAreClosedWRTMainLayer) }
%
% Set calcium ion channel colour to open value.
%
rule : 7.5 10 { #macro(CellIsInCaIonChannel) and #macro(CaIonChannelsAreOpenWRTMainLayer) }
%
% Rules for creation of calcium ions at cells near calcium ion channels when they are open.
%
rule : { (0,0,0) + randInt(5) + 1 } 10 { #macro(CellIsAdjacentToCaIonChannel) and #macro(CaIonChannelsAreOpenWRTCalciumLayer) }
rule : { (0,0,0) + randInt(4) + 1 } 10 { #macro(CellIsNearCaIonChannel) and #macro(CaIonChannelsAreOpenWRTCalciumLayer) }
%
% Rules for updating calcium ion concentration. Up to 3 calcium ions will be lost per time step for each cell. Note that the
% calcium ions do not 'see' any other particles (calcium ions are much smaller than any of the proteins or the Vesicles).
%
% Update calcium ion concentration in corner cells (corner of the fluid that is).
%
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (-1,0,0) + (0,-1,0) )/3)) } 10 { #macro(CellIsSEFluidCornerForCalciumLayer) }
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,1,0) + (1,0,0) )/3)) } 10 { #macro(CellIsNWFluidCornerForCalciumLayer) }
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,1,0) + (-1,0,0) )/3)) } 10 { #macro(CellIsSWFluidCornerForCalciumLayer) }
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,-1,0) + (1,0,0) )/3)) } 10 { #macro(CellIsNEFluidCornerForCalciumLayer) }
%
% Update calcium ion concentration cells along walls (edges of fluid next to wall, but not corners).
%
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (-1,0,0) + (0,-1,0) + (1,0,0) )/4)) } 10 { #macro(CellIsBottomRowFluidForCalciumLayer) }
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,1,0) + (0,-1,0) + (1,0,0) )/4)) } 10 { #macro(CellIsTopRowFluidForCalciumLayer) }
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,1,0) + (-1,0,0) + (1,0,0) )/4)) } 10 { #macro(CellIsLeftRowFluidForCalciumLayer) }
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,1,0) + (-1,0,0) + (0,-1,0) )/4)) } 10 { #macro(CellIsRightRowFluidForCalciumLayer) }
%
% Update calcium ion concentration in rows or columns one closer to the centre than the rows and columns adjacent to the wall.
%
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,1,0) + (-1,0,0) + (0,-1,0) + (1,0,0) )/5)) } 10 { #macro(CellIsFirstInnerSquareFluidForCalciumLayer) }
%
% Update calcium ion concentration in rows or columns two closer to the centre than the rows and columns adjacent to the wall.
%
rule : { max(0,0 - randInt(3) + round(((0,0,0) + (0,1,0) + (-1,0,0) + (0,-1,0) + (1,0,0) +
(-1,1,0)+ (-1,-1,0)+ (1,-1,0) + (1,1,0) +
(0,2,0) + (-2,0,0) + (0,-2,0) + (2,0,0) )/13)) } 10 { #macro(CellIsSecondInnerSquareFluidForCalciumLayer) }
%
% Update calcium ion concentration in the central part of the grid.
%
rule : { max(0,0 - randInt(3) + round(((-3,0,0) +
(-2,-1,0) + (-2,0,0) + (-2,1,0) +
(-1,-2,0) + (-1,-1,0) + (-1,0,0) + (-1,1,0) + (-1,2,0) +
(0,-3,0) + (0,-2,0) + (0,-1,0) + (0,0,0) + (0,1,0) + (0,2,0) + (0,3,0) +
(1,-2,0) + (1,-1,0) + (1,0,0) + (1,1,0) + (1,2,0) +
(2,-1,0) + (2,0,0) + (2,1,0) +
(3,0,0) )/25)) } 10 { #macro(CellIsInteriorFluidForCalciumLayer) }
%
% Rules specifically for stationary Vesicles and Synapsins to change status.
%
% Cell is a stationary Vesicle but is no longer attached to any Synapsins. Convert to Vesicle from north.
%
rule : 12 10 { #macro(CellIsStationaryVesicleNotInCluster) }
%
% Cell is a stationary Synapsin. It is bumped into by an activated CaMKII. The Synapsin is phosphorylated.
%
rule : { 21 + randInt(3) } 10 { #macro(CellIsStationarySynapsin) and (
(#macro(ApproachingActivatedCaMKIIFromE) and #macro(ActivatedCaMKIIFromEPhosphorylatesSynapsin)) or
(#macro(ApproachingActivatedCaMKIIFromN) and #macro(ActivatedCaMKIIFromNPhosphorylatesSynapsin)) or
(#macro(ApproachingActivatedCaMKIIFromW) and #macro(ActivatedCaMKIIFromWPhosphorylatesSynapsin)) or
(#macro(ApproachingActivatedCaMKIIFromS) and #macro(ActivatedCaMKIIFromSPhosphorylatesSynapsin))) }
%
% Rules for an already docked Vesicle.
%
rule : 0 10 { #macro(CellIsDockedVesicle) and #macro(HighCalciumContent) }
rule : 12 10 { #macro(CellIsInActiveZone) and #macro(CellToNIsDocked) and #macro(HighCalciumContentToN) }
rule : 6 10 { #macro(CellIsVesicleInActiveZone) }
rule : { (0,0,0) } 10 { #macro(CellIsDockedVesicle) }
%
% Rules for a moving Vesicle when the cell 'in front' is fluid. It has priority over other types of particles.
%
% Cell is a Vesicle from east.
%
rule : 11 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsFluid) and #macro(ApproachingVesicleFromNAtW) }
rule : 0 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsFluid) and #macro(ApproachingVesicleFromWAtW) and #macro(FromEWinsAtWOverW) }
rule : 11 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsFluid) and #macro(ApproachingVesicleFromWAtW) and #macro(CellIsInEastRegion) and #macro(FromWWinsAtWOverE) }
rule : 12 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsFluid) and #macro(ApproachingVesicleFromWAtW) and #macro(FromWWinsAtWOverE) }
rule : 0 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsFluid) }
%
% Cell is a Vesicle from north. This has the highest priority.
%
rule : 0 10 { #macro(CellIsVesicleFromN) and #macro(CellToSIsFluid) }
%
% Cell is a Vesicle from west.
%
rule : 13 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsFluid) and #macro(ApproachingVesicleFromNAtE) }
rule : 0 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsFluid) and #macro(ApproachingVesicleFromEAtE) and #macro(FromWWinsAtEOverE) }
rule : 13 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsFluid) and #macro(ApproachingVesicleFromEAtE) and #macro(CellIsInWestRegion) and #macro(FromEWinsAtEOverW) }
rule : 12 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsFluid) and #macro(ApproachingVesicleFromEAtE) and #macro(FromEWinsAtEOverW) }
rule : 0 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsFluid) }
%
% Rules for a moving Vesicle when the cell 'in front' is a particle.
%
% Cell is a Vesicle from east.
%
rule : 12 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsNotFluid) and #macro(CellToSIsActiveZone) }
rule : 12 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsNotFluid) and #macro(CellIsInNorthRegion) }
rule : 13 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsNotFluid) and #macro(CellIsInWestRegion) }
rule : 11 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsNotFluid) and #macro(CellIsInEastRegion) }
rule : 12 10 { #macro(CellIsVesicleFromE) and #macro(CellToWIsNotFluid) }
%
% Cell is a Vesicle from north.
%
rule : 11 10 { #macro(CellIsVesicleFromN) and #macro(CellToSIsDockedVesicle) and random < 0.5 }
rule : 13 10 { #macro(CellIsVesicleFromN) and #macro(CellToSIsDockedVesicle) }
rule : 11 10 { #macro(CellIsVesicleFromN) and #macro(CellToSIsNotFluid) and #macro(CellIsInEastRegion) and #macro(CellIsInSouthRegion) }
rule : 13 10 { #macro(CellIsVesicleFromN) and #macro(CellToSIsNotFluid) and #macro(CellIsInWestRegion) and #macro(CellIsInSouthRegion) }
rule : 12 10 { #macro(CellIsVesicleFromN) and #macro(CellToSIsNotFluid) }
rule : { 11 + randInt(2) } 10 { #macro(CellIsVesicleFromN) and #macro(CellToSIsNotFluid) }
%
% Cell is a Vesicle from west.
%
rule : 12 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsNotFluid) and #macro(CellToSIsActiveZone) }
rule : 12 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsNotFluid) and #macro(CellIsInNorthRegion) }
rule : 13 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsNotFluid) and #macro(CellIsInWestRegion) }
rule : 11 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsNotFluid) and #macro(CellIsInEastRegion) }
rule : 12 10 { #macro(CellIsVesicleFromW) and #macro(CellToEIsNotFluid) }
%
% Rules for a moving particle other than a Vesicle when a Vesicle is approaching the cell 'in front' which is Fluid.
%
% Cell is a particle from east other than a Vesicle. Cell to west is Fluid. A Vesicle is approaching the Fluid.
%
rule : { 21 + randInt(3) } 10 { #macro(CellIsSynapsinFromE) and #macro(CellToWIsFluid) and (#macro(ApproachingVesicleFromNAtW) or #macro(ApproachingVesicleFromWAtW)) }
rule : { 31 + randInt(3) } 10 { #macro(CellIsCaMFromE) and #macro(CellToWIsFluid) and (#macro(ApproachingVesicleFromNAtW) or #macro(ApproachingVesicleFromWAtW)) }
rule : { 31 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMFromE) and #macro(CellToWIsFluid) and (#macro(ApproachingVesicleFromNAtW) or #macro(ApproachingVesicleFromWAtW)) }
rule : { 41 + randInt(3) } 10 { #macro(CellIsCaMKIIFromE) and #macro(CellToWIsFluid) and (#macro(ApproachingVesicleFromNAtW) or #macro(ApproachingVesicleFromWAtW)) }
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMKIIFromE) and #macro(CellToWIsFluid) and (#macro(ApproachingVesicleFromNAtW) or #macro(ApproachingVesicleFromWAtW)) }
%
% Cell is a particle from north other than a Vesicle. Cell to south is Fluid. A Vesicle is approaching the Fluid.
%
rule : { 21 + randInt(3) } 10 { #macro(CellIsSynapsinFromN) and #macro(CellToSIsFluid) and (#macro(ApproachingVesicleFromEAtS) or #macro(ApproachingVesicleFromWAtS)) }
rule : { 31 + randInt(3) } 10 { #macro(CellIsCaMFromN) and #macro(CellToSIsFluid) and (#macro(ApproachingVesicleFromEAtS) or #macro(ApproachingVesicleFromWAtS)) }
rule : { 31 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMFromN) and #macro(CellToSIsFluid) and (#macro(ApproachingVesicleFromEAtS) or #macro(ApproachingVesicleFromWAtS)) }
rule : { 41 + randInt(3) } 10 { #macro(CellIsCaMKIIFromN) and #macro(CellToSIsFluid) and (#macro(ApproachingVesicleFromEAtS) or #macro(ApproachingVesicleFromWAtS)) }
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMKIIFromN) and #macro(CellToSIsFluid) and (#macro(ApproachingVesicleFromEAtS) or #macro(ApproachingVesicleFromWAtS)) }
%
% Cell is a particle from west other than a Vesicle. Cell to east is Fluid. A Vesicle is approaching the Fluid.
%
rule : { 21 + randInt(3) } 10 { #macro(CellIsSynapsinFromW) and #macro(CellToEIsFluid) and (#macro(ApproachingVesicleFromEAtE) or #macro(ApproachingVesicleFromNAtE)) }
rule : { 31 + randInt(3) } 10 { #macro(CellIsCaMFromW) and #macro(CellToEIsFluid) and (#macro(ApproachingVesicleFromEAtE) or #macro(ApproachingVesicleFromNAtE)) }
rule : { 31 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMFromW) and #macro(CellToEIsFluid) and (#macro(ApproachingVesicleFromEAtE) or #macro(ApproachingVesicleFromNAtE)) }
rule : { 41 + randInt(3) } 10 { #macro(CellIsCaMKIIFromW) and #macro(CellToEIsFluid) and (#macro(ApproachingVesicleFromEAtE) or #macro(ApproachingVesicleFromNAtE)) }
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMKIIFromW) and #macro(CellToEIsFluid) and (#macro(ApproachingVesicleFromEAtE) or #macro(ApproachingVesicleFromNAtE)) }
%
% Cell is a particle from south other than a Vesicle. Cell to north is Fluid. A Vesicle is approaching the Fluid.
%
rule : { 21 + randInt(3) } 10 { #macro(CellIsSynapsinFromS) and #macro(CellToNIsFluid) and (#macro(ApproachingVesicleFromEAtN) or #macro(ApproachingVesicleFromNAtN) or #macro(ApproachingVesicleFromWAtN)) }
rule : { 31 + randInt(3) } 10 { #macro(CellIsCaMFromS) and #macro(CellToNIsFluid) and (#macro(ApproachingVesicleFromEAtN) or #macro(ApproachingVesicleFromNAtN) or #macro(ApproachingVesicleFromWAtN)) }
rule : { 31 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMFromS) and #macro(CellToNIsFluid) and (#macro(ApproachingVesicleFromEAtN) or #macro(ApproachingVesicleFromNAtN) or #macro(ApproachingVesicleFromWAtN)) }
rule : { 41 + randInt(3) } 10 { #macro(CellIsCaMKIIFromS) and #macro(CellToNIsFluid) and (#macro(ApproachingVesicleFromEAtN) or #macro(ApproachingVesicleFromNAtN) or #macro(ApproachingVesicleFromWAtN)) }
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsActivatedCaMKIIFromS) and #macro(CellToNIsFluid) and (#macro(ApproachingVesicleFromEAtN) or #macro(ApproachingVesicleFromNAtN) or #macro(ApproachingVesicleFromWAtN)) }
%
% Rules for a Fluid when a Vesicle is approaching.
%
% Cell is Fluid. North is an approaching Vesicle.
%
rule : 12 10 { #macro(CellIsFluid) and #macro(ApproachingVesicleFromN) }
%
% Cell is Fluid. East is an approaching Vesicle.
%
rule : 12 10 { #macro(CellIsFluid) and #macro(ApproachingVesicleFromE) and #macro(CellToSIsNextToActiveZoneButNotAVesicle) }
rule : 11 10 { #macro(CellIsFluid) and #macro(ApproachingVesicleFromE) and #macro(ApproachingVesicleFromW) and #macro(FromEWinsOverW) }
rule : 11 10 { #macro(CellIsFluid) and #macro(ApproachingVesicleFromE) }
%
% Cell is Fluid. West is an approaching Vesicle.
%
rule : 12 10 { #macro(CellIsFluid) and #macro(ApproachingVesicleFromW) and #macro(CellToSIsNextToActiveZoneButNotAVesicle) }
rule : 13 10 { #macro(CellIsFluid) and #macro(ApproachingVesicleFromW) and #macro(ApproachingVesicleFromE) and #macro(FromWWinsOverE) }
rule : 13 10 { #macro(CellIsFluid) and #macro(ApproachingVesicleFromW) }
%
% Rules for a Fluid when an activated CaM is approaching and at least one CaMKII is approaching. A complex is formed.
%
% Cell is Fluid. East is an approaching activated CaM. There are three other approaching particles at least one of which is a CaMKII.
% East wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromE) and #macro(FromEWinsOverNWS) and (
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfThreeCaMKIIs)) or
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))) }
%
% Cell is Fluid. East is an approaching activated CaM. There are two other approaching particles at least one of which is a CaMKII.
% East wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromE) and (
(#macro(FromEWinsOverWS) and #macro(CellToNIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)))) or
(#macro(FromEWinsOverNS) and #macro(CellToWIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)))) or
(#macro(FromEWinsOverNW) and #macro(CellToSIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))))) }
%
% Cell is Fluid. East is an approaching activated CaM. There is one other approaching particle and it is a CaMKII.
% East wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromE) and #macro(ActivatedCaMBindsToOneOfOneCaMKII) and (
(#macro(FromEWinsOverN) and #macro(ApproachingCaMKIIFromN) and #macro(CellToWIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromEWinsOverW) and #macro(ApproachingCaMKIIFromW) and #macro(CellToNIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromEWinsOverS) and #macro(ApproachingCaMKIIFromS) and #macro(CellToNIsNotApproaching) and #macro(CellToWIsNotApproaching))) }
%
% Cell is Fluid. North is an approaching activated CaM. There are three other approaching particles at least one of which is a CaMKII.
% North wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromN) and #macro(FromNWinsOverEWS) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfThreeCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))) }
%
% Cell is Fluid. North is an approaching activated CaM. There are two other approaching particles at least one of which is a CaMKII.
% North wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromN) and (
(#macro(FromNWinsOverWS) and #macro(CellToEIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromW) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromW) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)))) or
(#macro(FromNWinsOverES) and #macro(CellToWIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)))) or
(#macro(FromNWinsOverEW) and #macro(CellToSIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))))) }
%
% Cell is Fluid. North is an approaching activated CaM. There is one other approaching particle and it is a CaMKII.
% North wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromN) and #macro(ActivatedCaMBindsToOneOfOneCaMKII) and (
(#macro(FromNWinsOverE) and #macro(ApproachingCaMKIIFromE) and #macro(CellToWIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromNWinsOverW) and #macro(ApproachingCaMKIIFromW) and #macro(CellToEIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromNWinsOverS) and #macro(ApproachingCaMKIIFromS) and #macro(CellToEIsNotApproaching) and #macro(CellToWIsNotApproaching))) }
%
% Cell is Fluid. West is an approaching activated CaM. There are three other approaching particles at least one of which is a CaMKII.
% West wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromW) and #macro(FromWWinsOverENS) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfThreeCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))) }
%
% Cell is Fluid. West is an approaching activated CaM. There are two other approaching particles at least one of which is a CaMKII.
% West wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromW) and (
(#macro(FromWWinsOverNS) and #macro(CellToEIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)))) or
(#macro(FromWWinsOverES) and #macro(CellToNIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)))) or
(#macro(FromWWinsOverEN) and #macro(CellToSIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))))) }
%
% Cell is Fluid. West is an approaching activated CaM. There is one other approaching particle and it is a CaMKII.
% West wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII) and (
(#macro(FromWWinsOverE) and #macro(ApproachingCaMKIIFromE) and #macro(CellToNIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromWWinsOverN) and #macro(ApproachingCaMKIIFromN) and #macro(CellToEIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromWWinsOverS) and #macro(ApproachingCaMKIIFromS) and #macro(CellToEIsNotApproaching) and #macro(CellToNIsNotApproaching))) }
%
% Cell is Fluid. South is an approaching activated CaM. There are three other approaching particles at least one of which is a CaMKII.
% South wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromS) and #macro(FromSWinsOverENW) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfThreeCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))) }
%
% Cell is Fluid. South is an approaching activated CaM. There are two other approaching particles at least one of which is a CaMKII.
% South wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromS) and (
(#macro(FromSWinsOverNW) and #macro(CellToEIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromN) and #macro(ApproachingNonCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromN) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))) ) or
(#macro(FromSWinsOverEW) and #macro(CellToNIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromW) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))) ) or
(#macro(FromSWinsOverEN) and #macro(CellToWIsNotApproaching) and (
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ActivatedCaMBindsToOneOfTwoCaMKIIs)) or
(#macro(ApproachingCaMKIIFromE) and #macro(ApproachingNonCaMKIIFromN) and #macro(ActivatedCaMBindsToOneOfOneCaMKII)) or
(#macro(ApproachingNonCaMKIIFromE) and #macro(ApproachingCaMKIIFromN) and #macro(ActivatedCaMBindsToOneOfOneCaMKII))))) }
%
% Cell is Fluid. South is an approaching activated CaM. There is one other approaching particle and it is a CaMKII.
% South wins right to advance. A CaM-CaMKII complex is formed.
%
rule : 0 10 { #macro(CellIsFluid) and #macro(ApproachingActivatedCaMFromS) and #macro(ActivatedCaMBindsToOneOfOneCaMKII) and (
(#macro(FromSWinsOverE) and #macro(ApproachingCaMKIIFromE) and #macro(CellToNIsNotApproaching) and #macro(CellToWIsNotApproaching)) or
(#macro(FromSWinsOverN) and #macro(ApproachingCaMKIIFromN) and #macro(CellToEIsNotApproaching) and #macro(CellToWIsNotApproaching)) or
(#macro(FromSWinsOverW) and #macro(ApproachingCaMKIIFromW) and #macro(CellToEIsNotApproaching) and #macro(CellToNIsNotApproaching))) }
%
% Rules for a Fluid when a CaMKII is approaching and at least one activated CaM is approaching.
%
% Cell is Fluid. East is an approaching CaMKII. There are three other approaching particles at least one of which is an activated CaM.
% East wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 41 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromE) and #macro(FromEWinsOverNWS) and (
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfThreeActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))) }
%
% Cell is Fluid. East is an approaching CaMKII. There are two other approaching particles at least one of which is an activated CaM.
% East wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 41 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromE) and (
(#macro(FromEWinsOverWS) and #macro(CellToNIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)))) or
(#macro(FromEWinsOverNS) and #macro(CellToWIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)))) or
(#macro(FromEWinsOverNW) and #macro(CellToSIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))))) }
%
% Cell is Fluid. East is an approaching CaMKII. There is one other approaching particle and it is an activated CaM.
% East wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 41 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromE) and #macro(CaMKIIBindsToOneOfOneActivatedCaM) and (
(#macro(FromEWinsOverN) and #macro(ApproachingActivatedCaMFromN) and #macro(CellToWIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromEWinsOverW) and #macro(ApproachingActivatedCaMFromW) and #macro(CellToNIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromEWinsOverS) and #macro(ApproachingActivatedCaMFromS) and #macro(CellToNIsNotApproaching) and #macro(CellToWIsNotApproaching))) }
%
% Cell is Fluid. North is an approaching CaMKII. There are three other approaching particles at least one of which is an activated CaM.
% North wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 42 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromN) and #macro(FromNWinsOverEWS) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfThreeActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))) }
%
% Cell is Fluid. North is an approaching CaMKII. There are two other approaching particles at least one of which is an activated CaM.
% North wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 42 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromN) and (
(#macro(FromNWinsOverWS) and #macro(CellToEIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromW) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromW) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)))) or
(#macro(FromNWinsOverES) and #macro(CellToWIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)))) or
(#macro(FromNWinsOverEW) and #macro(CellToSIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))))) }
%
% Cell is Fluid. North is an approaching CaMKII. There is one other approaching particle and it is an activated CaM.
% North wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 42 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromN) and #macro(CaMKIIBindsToOneOfOneActivatedCaM) and (
(#macro(FromNWinsOverE) and #macro(ApproachingActivatedCaMFromE) and #macro(CellToWIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromNWinsOverW) and #macro(ApproachingActivatedCaMFromW) and #macro(CellToEIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromNWinsOverS) and #macro(ApproachingActivatedCaMFromS) and #macro(CellToEIsNotApproaching) and #macro(CellToWIsNotApproaching))) }
%
% Cell is Fluid. West is an approaching CaMKII. There are three other approaching particles at least one of which is an activated CaM.
% West wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 43 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromW) and #macro(FromWWinsOverENS) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfThreeActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))) }
%
% Cell is Fluid. West is an approaching CaMKII. There are two other approaching particles at least one of which is an activated CaM.
% West wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 43 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromW) and (
(#macro(FromWWinsOverNS) and #macro(CellToEIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)))) or
(#macro(FromWWinsOverES) and #macro(CellToNIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)))) or
(#macro(FromWWinsOverEN) and #macro(CellToSIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))))) }
%
% Cell is Fluid. West is an approaching CaMKII. There is one other approaching particle and it is an activated CaM.
% West wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 43 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM) and (
(#macro(FromWWinsOverE) and #macro(ApproachingActivatedCaMFromE) and #macro(CellToNIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromWWinsOverN) and #macro(ApproachingActivatedCaMFromN) and #macro(CellToEIsNotApproaching) and #macro(CellToSIsNotApproaching)) or
(#macro(FromWWinsOverS) and #macro(ApproachingActivatedCaMFromS) and #macro(CellToEIsNotApproaching) and #macro(CellToNIsNotApproaching))) }
%
% Cell is Fluid. South is an approaching CaMKII. There are three other approaching particles at least one of which is an activated CaM.
% South wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 44 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromS) and #macro(FromSWinsOverENW) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfThreeActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))) }
%
% Cell is Fluid. South is an approaching CaMKII. There are two other approaching particles at least one of which is an activated CaM.
% South wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 44 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromS) and (
(#macro(FromSWinsOverNW) and #macro(CellToEIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromN) and #macro(ApproachingNonActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromN) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))) ) or
(#macro(FromSWinsOverEW) and #macro(CellToNIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromW) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))) ) or
(#macro(FromSWinsOverEN) and #macro(CellToWIsNotApproaching) and (
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(CaMKIIBindsToOneOfTwoActivatedCaMs)) or
(#macro(ApproachingActivatedCaMFromE) and #macro(ApproachingNonActivatedCaMFromN) and #macro(CaMKIIBindsToOneOfOneActivatedCaM)) or
(#macro(ApproachingNonActivatedCaMFromE) and #macro(ApproachingActivatedCaMFromN) and #macro(CaMKIIBindsToOneOfOneActivatedCaM))))) }
%
% Cell is Fluid. South is an approaching CaMKII. There is one other approaching particle and it is an activated CaM.
% South wins right to advance. A CaM-CaMKII complex is formed.
%
rule : { 44 + 0.4 } 10 { #macro(CellIsFluid) and #macro(ApproachingCaMKIIFromS) and #macro(CaMKIIBindsToOneOfOneActivatedCaM) and (
(#macro(FromSWinsOverE) and #macro(ApproachingActivatedCaMFromE) and #macro(CellToNIsNotApproaching) and #macro(CellToWIsNotApproaching)) or
(#macro(FromSWinsOverN) and #macro(ApproachingActivatedCaMFromN) and #macro(CellToEIsNotApproaching) and #macro(CellToWIsNotApproaching)) or
(#macro(FromSWinsOverW) and #macro(ApproachingActivatedCaMFromW) and #macro(CellToEIsNotApproaching) and #macro(CellToNIsNotApproaching))) }
%
% Rules for when cell is an activated CaM and a reaction occurs.
%
% Cell is an activated CaM from east. Cell to west is Fluid. Cell loses at west to three particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at west. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromE) and #macro(CellToWIsFluid) and (
(#macro(ApproachingCaMKIIFromNAtW) and #macro(FromNWinsAtWOverEWS) and (
(#macro(ApproachingActivatedCaMFromWAtW) and #macro(ApproachingActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverWSAtW)) or
(#macro(ApproachingActivatedCaMFromWAtW) and #macro(ApproachingNonActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverWAtW)) or
(#macro(ApproachingNonActivatedCaMFromWAtW) and #macro(ApproachingActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverSAtW)) or
(#macro(ApproachingNonActivatedCaMFromWAtW) and #macro(ApproachingNonActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)))) or
(#macro(ApproachingCaMKIIFromWAtW) and #macro(FromWWinsAtWOverENS) and (
(#macro(ApproachingActivatedCaMFromNAtW) and #macro(ApproachingActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverNSAtW)) or
(#macro(ApproachingActivatedCaMFromNAtW) and #macro(ApproachingNonActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverNAtW)) or
(#macro(ApproachingNonActivatedCaMFromNAtW) and #macro(ApproachingActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverSAtW)) or
(#macro(ApproachingNonActivatedCaMFromNAtW) and #macro(ApproachingNonActivatedCaMFromSAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)))) or
(#macro(ApproachingCaMKIIFromSAtW) and #macro(FromSWinsAtWOverENW) and (
(#macro(ApproachingActivatedCaMFromNAtW) and #macro(ApproachingActivatedCaMFromWAtW) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverNWAtW)) or
(#macro(ApproachingActivatedCaMFromNAtW) and #macro(ApproachingNonActivatedCaMFromWAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverNAtW)) or
(#macro(ApproachingNonActivatedCaMFromNAtW) and #macro(ApproachingActivatedCaMFromWAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverWAtW)) or
(#macro(ApproachingNonActivatedCaMFromNAtW) and #macro(ApproachingNonActivatedCaMFromWAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW))))) }
%
% Cell is an activated CaM from east. Cell to west is Fluid. Cell loses at west to two particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at west. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromE) and #macro(CellToWIsFluid) and (
(#macro(ApproachingCaMKIIFromNAtW) and (
(#macro(FromNWinsAtWOverEW) and #macro(ApproachingActivatedCaMFromWAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverWAtW)) or
(#macro(FromNWinsAtWOverEW) and #macro(ApproachingNonActivatedCaMFromWAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)) or
(#macro(FromNWinsAtWOverES) and #macro(ApproachingActivatedCaMFromSAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverSAtW)) or
(#macro(FromNWinsAtWOverES) and #macro(ApproachingNonActivatedCaMFromSAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)))) or
(#macro(ApproachingCaMKIIFromWAtW) and (
(#macro(FromWWinsAtWOverEN) and #macro(ApproachingActivatedCaMFromNAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverNAtW)) or
(#macro(FromWWinsAtWOverEN) and #macro(ApproachingNonActivatedCaMFromNAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)) or
(#macro(FromWWinsAtWOverES) and #macro(ApproachingActivatedCaMFromSAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverSAtW)) or
(#macro(FromWWinsAtWOverES) and #macro(ApproachingNonActivatedCaMFromSAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)))) or
(#macro(ApproachingCaMKIIFromSAtW) and (
(#macro(FromSWinsAtWOverEN) and #macro(ApproachingActivatedCaMFromNAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverNAtW)) or
(#macro(FromSWinsAtWOverEN) and #macro(ApproachingNonActivatedCaMFromNAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)) or
(#macro(FromSWinsAtWOverEW) and #macro(ApproachingActivatedCaMFromWAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtW) and #macro(ActivatedCaMToECombinesOverWAtW)) or
(#macro(FromSWinsAtWOverEW) and #macro(ApproachingNonActivatedCaMFromWAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW))))) }
%
% Cell is an activated CaM from east. Cell to west is Fluid. Cell loses at west to one particle which is a CaMKII.
% There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromE) and #macro(CellToWIsFluid) and (
(#macro(ApproachingCaMKIIFromNAtW) and #macro(FromNWinsAtWOverE) and
#macro(CellToWIsNotApproachingAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)) or
(#macro(ApproachingCaMKIIFromWAtW) and #macro(FromWWinsAtWOverE) and
#macro(CellToNIsNotApproachingAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW)) or
(#macro(ApproachingCaMKIIFromSAtW) and #macro(FromSWinsAtWOverE) and
#macro(CellToNIsNotApproachingAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtW))) }
%
% Cell is an activated CaM from north. Cell to south is Fluid. Cell loses at south to three particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at south. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromN) and #macro(CellToSIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtS) and #macro(FromEWinsAtSOverNWS) and (
(#macro(ApproachingActivatedCaMFromWAtS) and #macro(ApproachingActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverWSAtS)) or
(#macro(ApproachingActivatedCaMFromWAtS) and #macro(ApproachingNonActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverWAtS)) or
(#macro(ApproachingNonActivatedCaMFromWAtS) and #macro(ApproachingActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverSAtS)) or
(#macro(ApproachingNonActivatedCaMFromWAtS) and #macro(ApproachingNonActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)))) or
(#macro(ApproachingCaMKIIFromWAtS) and #macro(FromWWinsAtSOverENS) and (
(#macro(ApproachingActivatedCaMFromEAtS) and #macro(ApproachingActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverESAtS)) or
(#macro(ApproachingActivatedCaMFromEAtS) and #macro(ApproachingNonActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverEAtS)) or
(#macro(ApproachingNonActivatedCaMFromEAtS) and #macro(ApproachingActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverSAtS)) or
(#macro(ApproachingNonActivatedCaMFromEAtS) and #macro(ApproachingNonActivatedCaMFromSAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)))) or
(#macro(ApproachingCaMKIIFromSAtS) and #macro(FromSWinsAtSOverENW) and (
(#macro(ApproachingActivatedCaMFromEAtS) and #macro(ApproachingActivatedCaMFromWAtS) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverEWAtS)) or
(#macro(ApproachingActivatedCaMFromEAtS) and #macro(ApproachingNonActivatedCaMFromWAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverEAtS)) or
(#macro(ApproachingNonActivatedCaMFromEAtS) and #macro(ApproachingActivatedCaMFromWAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverWAtS)) or
(#macro(ApproachingNonActivatedCaMFromEAtS) and #macro(ApproachingNonActivatedCaMFromWAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS))))) }
%
% Cell is an activated CaM from north. Cell to south is Fluid. Cell loses at south to two particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at south. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromN) and #macro(CellToSIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtS) and (
(#macro(FromEWinsAtSOverNW) and #macro(ApproachingActivatedCaMFromWAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverWAtS)) or
(#macro(FromEWinsAtSOverNW) and #macro(ApproachingNonActivatedCaMFromWAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfoneActivatedCaMAtS)) or
(#macro(FromEWinsAtSOverNS) and #macro(ApproachingActivatedCaMFromSAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverSAtS)) or
(#macro(FromEWinsAtSOverNS) and #macro(ApproachingNonActivatedCaMFromSAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)))) or
(#macro(ApproachingCaMKIIFromWAtS) and (
(#macro(FromWWinsAtSOverEN) and #macro(ApproachingActivatedCaMFromEAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverEAtS)) or
(#macro(FromWWinsAtSOverEN) and #macro(ApproachingNonActivatedCaMFromEAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)) or
(#macro(FromWWinsAtSOverNS) and #macro(ApproachingActivatedCaMFromSAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverSAtS)) or
(#macro(FromWWinsAtSOverNS) and #macro(ApproachingNonActivatedCaMFromSAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)))) or
(#macro(ApproachingCaMKIIFromSAtS) and (
(#macro(FromSWinsAtSOverEN) and #macro(ApproachingActivatedCaMFromEAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverEAtS)) or
(#macro(FromSWinsAtSOverEN) and #macro(ApproachingNonActivatedCaMFromEAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)) or
(#macro(FromSWinsAtSOverNW) and #macro(ApproachingActivatedCaMFromWAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtS) and #macro(ActivatedCaMToNCombinesOverWAtS)) or
(#macro(FromSWinsAtSOverNW) and #macro(ApproachingNonActivatedCaMFromWAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS))))) }
%
% Cell is an activated CaM from north. Cell to south is Fluid. Cell loses at south to one particle which is a CaMKII.
% There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromN) and #macro(CellToSIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtS) and #macro(FromEWinsAtSOverN) and
#macro(CellToWIsNotApproachingAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)) or
(#macro(ApproachingCaMKIIFromWAtS) and #macro(FromWWinsAtSOverN) and
#macro(CellToEIsNotApproachingAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS)) or
(#macro(ApproachingCaMKIIFromSAtS) and #macro(FromSWinsAtSOverN) and
#macro(CellToEIsNotApproachingAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtS))) }
%
% Cell is an activated CaM from west. Cell to east is Fluid. Cell loses at east to three particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at east. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromW) and #macro(CellToEIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtE) and #macro(FromEWinsAtEOverNWS) and (
(#macro(ApproachingActivatedCaMFromNAtE) and #macro(ApproachingActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverNSAtE)) or
(#macro(ApproachingActivatedCaMFromNAtE) and #macro(ApproachingNonActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverNAtE)) or
(#macro(ApproachingNonActivatedCaMFromNAtE) and #macro(ApproachingActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverSAtE)) or
(#macro(ApproachingNonActivatedCaMFromNAtE) and #macro(ApproachingNonActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)))) or
(#macro(ApproachingCaMKIIFromNAtE) and #macro(FromNWinsAtEOverEWS) and (
(#macro(ApproachingActivatedCaMFromEAtE) and #macro(ApproachingActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverESAtE)) or
(#macro(ApproachingActivatedCaMFromEAtE) and #macro(ApproachingNonActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverEAtE)) or
(#macro(ApproachingNonActivatedCaMFromEAtE) and #macro(ApproachingActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverSAtE)) or
(#macro(ApproachingNonActivatedCaMFromEAtE) and #macro(ApproachingNonActivatedCaMFromSAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)))) or
(#macro(ApproachingCaMKIIFromSAtE) and #macro(FromSWinsAtEOverENW) and (
(#macro(ApproachingActivatedCaMFromEAtE) and #macro(ApproachingActivatedCaMFromNAtE) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverENAtE)) or
(#macro(ApproachingActivatedCaMFromEAtE) and #macro(ApproachingNonActivatedCaMFromNAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverEAtE)) or
(#macro(ApproachingNonActivatedCaMFromEAtE) and #macro(ApproachingActivatedCaMFromNAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverNAtE)) or
(#macro(ApproachingNonActivatedCaMFromEAtE) and #macro(ApproachingNonActivatedCaMFromNAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE))))) }
%
% Cell is an activated CaM from west. Cell to east is Fluid. Cell loses at east to two particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at east. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromW) and #macro(CellToEIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtE) and (
(#macro(FromEWinsAtEOverNW) and #macro(ApproachingActivatedCaMFromNAtE) and #macro(CellToSIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverNAtE)) or
(#macro(FromEWinsAtEOverNW) and #macro(ApproachingNonActivatedCaMFromNAtE) and #macro(CellToSIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)) or
(#macro(FromEWinsAtEOverWS) and #macro(ApproachingActivatedCaMFromSAtE) and #macro(CellToNIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverSAtE)) or
(#macro(FromEWinsAtEOverWS) and #macro(ApproachingNonActivatedCaMFromSAtE) and #macro(CellToNIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)))) or
(#macro(ApproachingCaMKIIFromNAtE) and (
(#macro(FromNWinsAtEOverEW) and #macro(ApproachingActivatedCaMFromEAtE) and #macro(CellToSIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverEAtE)) or
(#macro(FromNWinsAtEOverEW) and #macro(ApproachingNonActivatedCaMFromEAtE) and #macro(CellToSIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)) or
(#macro(FromNWinsAtEOverWS) and #macro(ApproachingActivatedCaMFromSAtE) and #macro(CellToEIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverSAtE)) or
(#macro(FromNWinsAtEOverWS) and #macro(ApproachingNonActivatedCaMFromSAtE) and #macro(CellToEIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)))) or
(#macro(ApproachingCaMKIIFromSAtE) and (
(#macro(FromSWinsAtEOverEW) and #macro(ApproachingActivatedCaMFromEAtE) and #macro(CellToNIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverEAtE)) or
(#macro(FromSWinsAtEOverEW) and #macro(ApproachingNonActivatedCaMFromEAtE) and #macro(CellToNIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)) or
(#macro(FromSWinsAtEOverNW) and #macro(ApproachingActivatedCaMFromNAtE) and #macro(CellToEIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtE) and #macro(ActivatedCaMToWCombinesOverNAtE)) or
(#macro(FromSWinsAtEOverNW) and #macro(ApproachingNonActivatedCaMFromNAtE) and #macro(CellToEIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE))))) }
%
% Cell is an activated CaM from west. Cell to east is Fluid. Cell loses at east to one particle which is a CaMKII.
% There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromW) and #macro(CellToEIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtE) and #macro(FromEWinsAtEOverW) and
#macro(CellToNIsNotApproachingAtE) and #macro(CellToSIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)) or
(#macro(ApproachingCaMKIIFromNAtE) and #macro(FromNWinsAtEOverW) and
#macro(CellToEIsNotApproachingAtE) and #macro(CellToSIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE)) or
(#macro(ApproachingCaMKIIFromSAtE) and #macro(FromSWinsAtEOverW) and
#macro(CellToEIsNotApproachingAtE) and #macro(CellToNIsNotApproachingAtE) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtE))) }
%
% Cell is an activated CaM from south. Cell to north is Fluid. Cell loses at north to three particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at north. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromS) and #macro(CellToNIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtN) and #macro(FromEWinsAtNOverNWS) and (
(#macro(ApproachingActivatedCaMFromNAtN) and #macro(ApproachingActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverNWAtN)) or
(#macro(ApproachingActivatedCaMFromNAtN) and #macro(ApproachingNonActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverNAtN)) or
(#macro(ApproachingNonActivatedCaMFromNAtN) and #macro(ApproachingActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverWAtN)) or
(#macro(ApproachingNonActivatedCaMFromNAtN) and #macro(ApproachingNonActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)))) or
(#macro(ApproachingCaMKIIFromNAtN) and #macro(FromNWinsAtNOverEWS) and (
(#macro(ApproachingActivatedCaMFromEAtN) and #macro(ApproachingActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverEWAtN)) or
(#macro(ApproachingActivatedCaMFromEAtN) and #macro(ApproachingNonActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverEAtN)) or
(#macro(ApproachingNonActivatedCaMFromEAtN) and #macro(ApproachingActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverWAtN)) or
(#macro(ApproachingNonActivatedCaMFromEAtN) and #macro(ApproachingNonActivatedCaMFromWAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)))) or
(#macro(ApproachingCaMKIIFromWAtN) and #macro(FromWWinsAtNOverENS) and (
(#macro(ApproachingActivatedCaMFromEAtN) and #macro(ApproachingActivatedCaMFromNAtN) and
#macro(CaMKIIBindsToOneOfThreeActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverENAtN)) or
(#macro(ApproachingActivatedCaMFromEAtN) and #macro(ApproachingNonActivatedCaMFromNAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverEAtN)) or
(#macro(ApproachingNonActivatedCaMFromEAtN) and #macro(ApproachingActivatedCaMFromNAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverNAtN)) or
(#macro(ApproachingNonActivatedCaMFromEAtN) and #macro(ApproachingNonActivatedCaMFromNAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN))))) }
%
% Cell is an activated CaM from south. Cell to north is Fluid. Cell loses at north to two particles at least one of which is a CaMKII.
% CaMKII moves into Fluid at north. There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromS) and #macro(CellToNIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtN) and (
(#macro(FromEWinsAtNOverNS) and #macro(ApproachingActivatedCaMFromNAtN) and #macro(CellToWIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverNAtN)) or
(#macro(FromEWinsAtNOverNS) and #macro(ApproachingNonActivatedCaMFromNAtN) and #macro(CellToWIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)) or
(#macro(FromEWinsAtNOverWS) and #macro(ApproachingActivatedCaMFromWAtN) and #macro(CellToNIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverWAtN)) or
(#macro(FromEWinsAtNOverWS) and #macro(ApproachingNonActivatedCaMFromWAtN) and #macro(CellToNIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)))) or
(#macro(ApproachingCaMKIIFromNAtN) and (
(#macro(FromNWinsAtNOverES) and #macro(ApproachingActivatedCaMFromEAtN) and #macro(CellToWIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverEAtN)) or
(#macro(FromNWinsAtNOverES) and #macro(ApproachingNonActivatedCaMFromEAtN) and #macro(CellToWIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)) or
(#macro(FromNWinsAtNOverWS) and #macro(ApproachingActivatedCaMFromWAtN) and #macro(CellToEIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverWAtN)) or
(#macro(FromNWinsAtNOverWS) and #macro(ApproachingNonActivatedCaMFromWAtN) and #macro(CellToEIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)))) or
(#macro(ApproachingCaMKIIFromWAtN) and (
(#macro(FromWWinsAtNOverES) and #macro(ApproachingActivatedCaMFromEAtN) and #macro(CellToNIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverEAtN)) or
(#macro(FromWWinsAtNOverES) and #macro(ApproachingNonActivatedCaMFromEAtN) and #macro(CellToNIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)) or
(#macro(FromWWinsAtNOverNS) and #macro(ApproachingActivatedCaMFromNAtN) and #macro(CellToEIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfTwoActivatedCaMsAtN) and #macro(ActivatedCaMToSCombinesOverNAtN)) or
(#macro(FromWWinsAtNOverNS) and #macro(ApproachingActivatedCaMFromNAtN) and #macro(CellToEIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN))))) }
%
% Cell is an activated CaM from south. Cell to north is Fluid. Cell loses at north to one particle which is a CaMKII.
% There is a reaction.
%
rule : 0 10 { #macro(CellIsActivatedCaMFromS) and #macro(CellToNIsFluid) and (
(#macro(ApproachingCaMKIIFromEAtN) and #macro(FromEWinsAtNOverS) and
#macro(CellToNIsNotApproachingAtN) and #macro(CellToWIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)) or
(#macro(ApproachingCaMKIIFromNAtN) and #macro(FromNWinsAtNOverS) and
#macro(CellToEIsNotApproachingAtN) and #macro(CellToWIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN)) or
(#macro(ApproachingCaMKIIFromWAtN) and #macro(FromWWinsAtNOverS) and
#macro(CellToEIsNotApproachingAtN) and #macro(CellToNIsNotApproachingAtN) and
#macro(CaMKIIBindsToOneOfOneActivatedCaMAtN))) }
%
% Rules for when cell is a CaMKII and a reaction occurs.
%
% Cell is a CaMKII from east. Cell to west is Fluid. Cell loses at west to three particles at least one of which is an activated CaM.
% Activated CaM moves into Fluid at west. There is a reaction.
%
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsCaMKIIFromE) and #macro(CellToWIsFluid) and (
(#macro(ApproachingActivatedCaMFromNAtW) and #macro(FromNWinsAtWOverEWS) and (
(#macro(ApproachingCaMKIIFromWAtW) and #macro(ApproachingCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfThreeCaMKIIsAtW) and #macro(CaMKIIToECombinesOverWSAtW)) or
(#macro(ApproachingCaMKIIFromWAtW) and #macro(ApproachingNonCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverWAtW)) or
(#macro(ApproachingNonCaMKIIFromWAtW) and #macro(ApproachingCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverSAtW)) or
(#macro(ApproachingNonCaMKIIFromWAtW) and #macro(ApproachingNonCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)))) or
(#macro(ApproachingActivatedCaMFromWAtW) and #macro(FromWWinsAtWOverENS) and (
(#macro(ApproachingCaMKIIFromNAtW) and #macro(ApproachingCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfThreeCaMKIIsAtW) and #macro(CaMKIIToECombinesOverNSAtW)) or
(#macro(ApproachingCaMKIIFromNAtW) and #macro(ApproachingNonCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverNAtW)) or
(#macro(ApproachingNonCaMKIIFromNAtW) and #macro(ApproachingCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverSAtW)) or
(#macro(ApproachingNonCaMKIIFromNAtW) and #macro(ApproachingNonCaMKIIFromSAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)))) or
(#macro(ApproachingActivatedCaMFromSAtW) and #macro(FromSWinsAtWOverENW) and (
(#macro(ApproachingCaMKIIFromNAtW) and #macro(ApproachingCaMKIIFromWAtW) and
#macro(ActivatedCaMBindsToOneOfThreeCaMKIIsAtW) and #macro(CaMKIIToECombinesOverNWAtW)) or
(#macro(ApproachingCaMKIIFromNAtW) and #macro(ApproachingNonCaMKIIFromWAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverNAtW)) or
(#macro(ApproachingNonCaMKIIFromNAtW) and #macro(ApproachingCaMKIIFromWAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverWAtW)) or
(#macro(ApproachingNonCaMKIIFromNAtW) and #macro(ApproachingNonCaMKIIFromWAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW))))) }
%
% Cell is a CaMKII from east. Cell to west is Fluid. Cell loses at west to two particles at least one of which is an activated CaM.
% Activated CaM moves into Fluid at west. There is a reaction.
%
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsCaMKIIFromE) and #macro(CellToWIsFluid) and (
(#macro(ApproachingActivatedCaMFromNAtW) and (
(#macro(FromNWinsAtWOverEW) and #macro(ApproachingCaMKIIFromWAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverWAtW)) or
(#macro(FromNWinsAtWOverEW) and #macro(ApproachingNonCaMKIIFromWAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)) or
(#macro(FromNWinsAtWOverES) and #macro(ApproachingCaMKIIFromSAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverSAtW)) or
(#macro(FromNWinsAtWOverES) and #macro(ApproachingNonCaMKIIFromSAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)))) or
(#macro(ApproachingActivatedCaMFromWAtW) and (
(#macro(FromWWinsAtWOverEN) and #macro(ApproachingCaMKIIFromNAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverNAtW)) or
(#macro(FromWWinsAtWOverEN) and #macro(ApproachingNonCaMKIIFromNAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)) or
(#macro(FromWWinsAtWOverES) and #macro(ApproachingCaMKIIFromSAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverSAtW)) or
(#macro(FromWWinsAtWOverES) and #macro(ApproachingNonCaMKIIFromSAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)))) or
(#macro(ApproachingActivatedCaMFromSAtW) and (
(#macro(FromSWinsAtWOverEN) and #macro(ApproachingCaMKIIFromNAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverNAtW)) or
(#macro(FromSWinsAtWOverEN) and #macro(ApproachingNonCaMKIIFromNAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)) or
(#macro(FromSWinsAtWOverEW) and #macro(ApproachingCaMKIIFromWAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtW) and #macro(CaMKIIToECombinesOverWAtW)) or
(#macro(FromSWinsAtWOverEW) and #macro(ApproachingNonCaMKIIFromWAtW) and #macro(CellToNIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW))))) }
%
% Cell is a CaMKII from east. Cell to west is Fluid. Cell loses at west to one particle which is an activated CaM.
% There is a reaction.
%
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsCaMKIIFromE) and #macro(CellToWIsFluid) and (
(#macro(ApproachingActivatedCaMFromNAtW) and #macro(FromNWinsAtWOverE) and
#macro(CellToWIsNotApproachingAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)) or
(#macro(ApproachingActivatedCaMFromWAtW) and #macro(FromWWinsAtWOverE) and
#macro(CellToNIsNotApproachingAtW) and #macro(CellToSIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW)) or
(#macro(ApproachingActivatedCaMFromSAtW) and #macro(FromSWinsAtWOverE) and
#macro(CellToNIsNotApproachingAtW) and #macro(CellToWIsNotApproachingAtW) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtW))) }
%
% Cell is a CaMKII from north. Cell to south is Fluid. Cell loses at south to three particles at least one of which is an activated CaM.
% Activated CaM moves into Fluid at south. There is a reaction.
%
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsCaMKIIFromN) and #macro(CellToSIsFluid) and (
(#macro(ApproachingActivatedCaMFromEAtS) and #macro(FromEWinsAtSOverNWS) and (
(#macro(ApproachingCaMKIIFromWAtS) and #macro(ApproachingCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfThreeCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverWSAtS)) or
(#macro(ApproachingCaMKIIFromWAtS) and #macro(ApproachingNonCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverWAtS)) or
(#macro(ApproachingNonCaMKIIFromWAtS) and #macro(ApproachingCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverSAtS)) or
(#macro(ApproachingNonCaMKIIFromWAtS) and #macro(ApproachingNonCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS)))) or
(#macro(ApproachingActivatedCaMFromWAtS) and #macro(FromWWinsAtSOverENS) and (
(#macro(ApproachingCaMKIIFromEAtS) and #macro(ApproachingCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfThreeCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverESAtS)) or
(#macro(ApproachingCaMKIIFromEAtS) and #macro(ApproachingNonCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverEAtS)) or
(#macro(ApproachingNonCaMKIIFromEAtS) and #macro(ApproachingCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverSAtS)) or
(#macro(ApproachingNonCaMKIIFromEAtS) and #macro(ApproachingNonCaMKIIFromSAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS)))) or
(#macro(ApproachingActivatedCaMFromSAtS) and #macro(FromSWinsAtSOverENW) and (
(#macro(ApproachingCaMKIIFromEAtS) and #macro(ApproachingCaMKIIFromWAtS) and
#macro(ActivatedCaMBindsToOneOfThreeCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverEWAtS)) or
(#macro(ApproachingCaMKIIFromEAtS) and #macro(ApproachingNonCaMKIIFromWAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverEAtS)) or
(#macro(ApproachingNonCaMKIIFromEAtS) and #macro(ApproachingCaMKIIFromWAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverWAtS)) or
(#macro(ApproachingNonCaMKIIFromEAtS) and #macro(ApproachingNonCaMKIIFromWAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS))))) }
%
% Cell is a CaMKII from north. Cell to south is Fluid. Cell loses at south to two particles at least one of which is an activated CaM.
% Activated CaM moves into Fluid at south. There is a reaction.
%
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsCaMKIIFromN) and #macro(CellToSIsFluid) and (
(#macro(ApproachingActivatedCaMFromEAtS) and (
(#macro(FromEWinsAtSOverNW) and #macro(ApproachingCaMKIIFromWAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverWAtS)) or
(#macro(FromEWinsAtSOverNW) and #macro(ApproachingNonCaMKIIFromWAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS)) or
(#macro(FromEWinsAtSOverNS) and #macro(ApproachingCaMKIIFromSAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverSAtS)) or
(#macro(FromEWinsAtSOverNS) and #macro(ApproachingNonCaMKIIFromSAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfoneCaMKIIAtS)))) or
(#macro(ApproachingActivatedCaMFromWAtS) and (
(#macro(FromWWinsAtSOverEN) and #macro(ApproachingCaMKIIFromEAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverEAtS)) or
(#macro(FromWWinsAtSOverEN) and #macro(ApproachingNonCaMKIIFromEAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS)) or
(#macro(FromWWinsAtSOverNS) and #macro(ApproachingCaMKIIFromSAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverSAtS)) or
(#macro(FromWWinsAtSOverNS) and #macro(ApproachingNonCaMKIIFromSAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS)))) or
(#macro(ApproachingActivatedCaMFromSAtS) and (
(#macro(FromSWinsAtSOverEN) and #macro(ApproachingCaMKIIFromEAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverEAtS)) or
(#macro(FromSWinsAtSOverEN) and #macro(ApproachingNonCaMKIIFromEAtS) and #macro(CellToWIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS)) or
(#macro(FromSWinsAtSOverNW) and #macro(ApproachingCaMKIIFromWAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfTwoCaMKIIsAtS) and #macro(CaMKIIToNCombinesOverWAtS)) or
(#macro(FromSWinsAtSOverNW) and #macro(ApproachingNonCaMKIIFromWAtS) and #macro(CellToEIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS))))) }
%
% Cell is a CaMKII from north. Cell to south is Fluid. Cell loses at south to one particle which is an activated CaM.
% There is a reaction.
%
rule : { 41 + randInt(3) + 0.4 } 10 { #macro(CellIsCaMKIIFromN) and #macro(CellToSIsFluid) and (
(#macro(ApproachingActivatedCaMFromEAtS) and #macro(FromEWinsAtSOverN) and
#macro(CellToWIsNotApproachingAtS) and #macro(CellToSIsNotApproachingAtS) and
#macro(ActivatedCaMBindsToOneOfOneCaMKIIAtS)) or
(#macro(ApproachingActivatedCaMFromWAtS) and #macro(FromWWinsAtSOverN) and
#macro(CellToEIsNotApproachingAtS) and #macro(CellToSIsNotApproachingAtS) and