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‎doc/development/development.rst‎

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#. Avoid using abbreviations in variable names (e.g. use :code:`recording` instead of :code:`rec`). It is especially important to avoid single letter variables.
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#. Use index as singular and indices for plural following the NumPy convention. Avoid idx or indexes. Plus, id and ids are reserved for identifiers (i.e. channel_ids)
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#. We use file_path and folder_path (instead of file_name and folder_name) for clarity.
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#. For the titles of documentation pages, only capitalize the first letter of the first word and classes or software packages. For example, "How to use a SortingAnalyzer in SpikeInterface".
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#. For creating headers to divide sections of code we use the following convention (see issue `#3019 <https://github.com/SpikeInterface/spikeinterface/issues/3019>`_):
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‎doc/how_to/combine_recordings.rst‎

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Combine Recordings in SpikeInterface
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Combine recordings in SpikeInterface
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====================================
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In this tutorial we will walk through combining multiple recording objects. Sometimes this occurs due to hardware

‎doc/how_to/load_matlab_data.rst‎

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Export MATLAB Data to Binary & Load in SpikeInterface
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Export MATLAB data to binary & load in SpikeInterface
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========================================================
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In this tutorial, we will walk through the process of exporting data from MATLAB in a binary format and subsequently loading it using SpikeInterface in Python.

‎doc/how_to/load_your_data_into_sorting.rst‎

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Load Your Own Data into a Sorting
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=================================
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Load your own data into a Sorting object
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========================================
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Why make a :code:`Sorting`?
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‎doc/how_to/process_by_channel_group.rst‎

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Process a Recording by Channel Group
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Process a recording by channel group
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====================================
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In this tutorial, we will walk through how to preprocess and sort a recording

‎doc/how_to/viewers.rst‎

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Visualize Data
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Visualize data
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==============
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There are several ways to plot signals (raw, preprocessed) and spikes.

‎doc/releases/0.101.2.rst‎

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.. _release0.101.2:
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SpikeInterface 0.101.2 release notes
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------------------------------------
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4th October 2024
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Minor release with bug fixes
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core:
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* Fix `random_spikes_selection()` (#3456)
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* Expose `backend_options` at the analyzer level to set `storage_options` and `saving_options` (#3446)
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* Avoid warnings in `SortingAnalyzer` (#3455)
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* Fix `reset_global_job_kwargs` (#3452)
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* Allow to save recordingless analyzer as (#3443)
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* Fix compute analyzer pipeline with tmp recording (#3433)
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* Fix bug in saving zarr recordings (#3432)
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* Set `run_info` to `None` for `load_waveforms` (#3430)
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* Fix integer overflow in parallel computing (#3426)
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* Refactor `pandas` save load and `convert_dtypes` (#3412)
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* Add spike-train based lazy `SortingGenerator` (#2227)
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extractors:
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* Improve IBL recording extractors by PID (#3449)
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sorters:
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* Get default encoding for `Popen` (#3439)
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postprocessing:
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* Add `max_threads_per_process` and `mp_context` to pca by channel computation and PCA metrics (#3434)
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widgets:
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* Fix metrics widgets for convert_dtypes (#3417)
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* Fix plot motion for multi-segment (#3414)
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motion correction:
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* Auto-cast recording to float prior to interpolation (#3415)
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documentation:
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* Add docstring for `generate_unit_locations` (#3418)
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* Add `get_channel_locations` to the base recording API (#3403)
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continuous integration:
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* Enable testing arm64 Mac architecture in the CI (#3422)
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* Add kachery_zone secret (#3416)
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testing:
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* Relax causal filter tests (#3445)
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Contributors:
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* @alejoe91
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* @h-mayorquin
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* @jiumao2
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* @samuelgarcia
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* @zm711

‎doc/whatisnew.rst‎

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.. toctree::
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:maxdepth: 1
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releases/0.101.2.rst
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releases/0.101.1.rst
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releases/0.101.0.rst
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releases/0.100.8.rst
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releases/0.9.1.rst
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Version 0.101.2
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===============
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* Minor release with bug fixes
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Version 0.101.1
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===============
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‎pyproject.toml‎

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# for github test : probeinterface and neo from master
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# for release we need pypi, so this need to be commented
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"probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
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"neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
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# "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
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# "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
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]
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test_extractors = [
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# Functions to download data in neo test suite
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"pooch>=1.8.2",
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"datalad>=1.0.2",
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"probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
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"neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
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# "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
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# "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
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test_preprocessing = [
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# for github test : probeinterface and neo from master
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# for release we need pypi, so this need to be commented
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"probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
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"neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
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# "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
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# "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
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docs = [
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"datalad>=1.0.2",
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# for release we need pypi, so this needs to be commented
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"probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git", # We always build from the latest version
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"neo @ git+https://github.com/NeuralEnsemble/python-neo.git", # We always build from the latest version
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# "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git", # We always build from the latest version
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# "neo @ git+https://github.com/NeuralEnsemble/python-neo.git", # We always build from the latest version
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]
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‎src/spikeinterface/__init__.py‎

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# This flag must be set to False for release
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# This avoids using versioning that contains ".dev0" (and this is a better choice)
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# This is mainly useful when using run_sorter in a container and spikeinterface install
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DEV_MODE = True
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# DEV_MODE = False
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# DEV_MODE = True
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DEV_MODE = False

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