Prepare 0.102.3

doc/releases/0.102.3.rst

@@ -0,0 +1,99 @@
+.. _release0.102.3:
+
+SpikeInterface 0.102.3 release notes
+------------------------------------
+
+May 7th 2025
+
+Minor release with bug fixes
+
+
+core:
+
+* Cleanup base sorting extractor  (#3871)
+* Propagate job_kwargs to noise_levels (#3867)
+* Add del dunder to binary recording (#3833)
+* Ensure matching of args in aggregate_channels and ChannelAggregationRecording (#3829)
+
+extractors:
+
+* Channel names to singular as property (#3879)
+* Pickle fix for the IBL recording (#3863)
+* Implement WhiteMatterRecordingExtractor (#3849)
+* BlackrockSortingExtractor - load only .nev files, ignore nsX (#3843)
+* Backwards compatibility for sync stream in OpenEphysBinary (#3839)
+* Remove ceiling on pyedflib (#3752)
+
+preprocessing:
+
+* Add `compute_motion` function (#3905)
+
+sorters:
+
+* Fix ks4 tests and support ks4>=4.0.34 (#3900)
+* Patch for memory usage while matching in SC2 (#3889)
+* Update KS4 wrapper for versions 4.0.31+ (#3872)
+* Incorporated kilosort4's setup_logger() function to ensure generation of kilosort4.log file in sorter_output folder (#3866)
+* Updated KilosortBase's channel map generation to support json probe maps with kcoord information. (#3852)
+
+qualitymetrics:
+
+* Add numba check to `sd_ratio` (#3890)
+
+widgets:
+
+* Fix plot traces when t_start is defined (#3893)
+* Add docs for custom plotting and change default `limits` in `UnitLocationsWidget` (#3855)
+* Allow UnitWaveformsWidget to use probeinterface plot_probe (#3819)
+
+sortingcomponents:
+
+* Patch for memory usage while matching in SC2 (#3889)
+* Returned svd (#3847)
+* Minor improvements to extract_peak_svd (#3836)
+* Enhance split with various options (#3835)
+* Function to estimate templates from svd (#3834)
+* Prevent error of trying to delete non-existent variable in sorting components (#3820)
+* Graph tools (#3714)
+
+motion correction:
+
+* Refactor `correct_motion` into compute motion, then make interpolation (#3905)
+
+
+documentation:
+
+* Add how to make a release notes (#3793)
+
+continuous integration:
+
+* Update git-annex install in codecov tests (#3878)
+* Change datalad installation in the CI for linux (#3877)
+
+packaging:
+
+* Cleanup pyproject - remove duplicate from testing section (#3874)
+* More cleanup of imports focused mostly on testing and utils around testing (#3841)
+
+testing:
+
+* Skip test_estimate_templates_from_recording because SC2 is not stable enough (#3870)
+
+Contributors:
+
+* @RobertoDF
+* @alejoe91
+* @chrishalcrow
+* @cwindolf
+* @emmanuel-ferdman
+* @h-mayorquin
+* @jakeswann1
+* @jonahpearl
+* @luiztauffer
+* @mahlzahn
+* @nikhilchandra
+* @oliche
+* @pauladkisson
+* @samuelgarcia
+* @yger
+* @zm711

doc/whatisnew.rst

@@ -8,6 +8,8 @@ Release notes
 .. toctree::
   :maxdepth: 1
 
+  releases/0.102.3.rst
+  releases/0.102.2.rst
   releases/0.102.1.rst
   releases/0.102.0.rst
   releases/0.101.2.rst
@@ -47,6 +49,16 @@ Release notes
   releases/0.9.1.rst
 
 
+Version 0.102.3
+===============
+
+* Minor release with bug fixes
+
+Version 0.102.2
+===============
+
+* Minor release with bug fixes
+
 Version 0.102.1
 ===============
 

pyproject.toml

@@ -25,7 +25,7 @@ dependencies = [
     "threadpoolctl>=3.0.0",
     "tqdm",
     "zarr>=2.18,<3",
-    "neo>=0.14.0",
+    "neo>=0.14.1",
     "probeinterface>=0.2.23",
     "packaging",
     "numcodecs<0.16.0", # For supporting zarr < 3
@@ -126,17 +126,17 @@ test_core = [
 
     # for github test : probeinterface and neo from master
     # for release we need pypi, so this need to be commented
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
 ]
 
 test_extractors = [
     # Functions to download data in neo test suite
     "pooch>=1.8.2",
     "datalad>=1.0.2",
     # Commenting out for release
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
 ]
 
 test_preprocessing = [
@@ -174,8 +174,8 @@ test = [
 
     # for github test : probeinterface and neo from master
     # for release we need pypi, so this need to be commented
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
 ]
 
 docs = [
@@ -200,8 +200,8 @@ docs = [
     "datalad>=1.0.2",
 
     # for release we need pypi, so this needs to be commented
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",  # We always build from the latest version
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",  # We always build from the latest version
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",  # We always build from the latest version
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",  # We always build from the latest version
 ]
 
 dev = [

src/spikeinterface/__init__.py

@@ -27,5 +27,5 @@
 # This flag must be set to False for release
 # This avoids using versioning that contains ".dev0" (and this is a better choice)
 # This is mainly useful when using run_sorter in a container and spikeinterface install
-DEV_MODE = True
-# DEV_MODE = False
+# DEV_MODE = True
+DEV_MODE = False