Create Clustalo version 1.2.4-2026 with new URL

[cwoodside1278]

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number in build-files (i.e. docker-builds/build-files/spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. build-files/shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. docker-builds/build-files/spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[cwoodside1278]

So the link no longer exists: http://www.clustal.org/omega/
Trying to find what the replacement should be

Omg I think someone bought the domain... https://pmc.ncbi.nlm.nih.gov/articles/PMC5734385/
The official pubmed link went here, https://www.clustal.org/ which is a people search

[cwoodside1278]

Hmm getting closer, but unsure if this is what would help: https://github.com/hybsearch/clustalo or even https://github.com/GSLBiotech/clustal-omega. These seem to at least have the code files, but I can't help but feel a little over my head here.

[Kincekara]

Fortunately, nothing completely disappears from the internet. You can reach the source code and prebuilt binaries from archive.org
e.g. https://web.archive.org/web/20251211035433/http://www.clustal.org/omega/

[Kincekara]

Alternatively, you can copy the binary from our previous image. If binaries do not work, using a newer source code would be easier for compilation.