cemtool/probability sheet.Rmd at master · StanWijn/cemtool · GitHub

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---
title: "Probability sheet"
author: "Stan Wijn MSc"
date: "9/25/2019"

output:
  html_document:
    toc: true
    toc_float: true
    theme: united
    highlight: tango


---


## "cemtool" Probability sheet {.tabset}

from in the first column, to in the first row

```{r figurecal, echo=FALSE, message=FALSE, warnings=FALSE, results='asis'}
require(diagram)

first <- function(HS){
  DiffMat  <- matrix(data = 0, nrow = HS, ncol = HS)
  AA <- as.data.frame(DiffMat)

  AA[[2,1]] <- "p.A"
  AA[[HS,1]] <- "p.Z"
  AA[[HS,2]] <- "p.Y"


  if(HS>3){
    AA[[3,1]] <- "p.B"
    AA[[3,2]] <- "p.C"
    AA[[HS,3]] <- "p.X"
  }
  if(HS>4){
    AA[[4,1]] <- "p.D"
    AA[[4,2]] <- "p.E"
    AA[[4,3]] <- "p.F"
    AA[[HS,4]] <- "p.W"

  }
  if(HS>5){
    AA[[5,1]] <- "p.G"
    AA[[5,2]] <- "p.H"
    AA[[5,3]] <- "p.I"
    AA[[5,4]] <- "p.J"
    AA[[HS,5]] <- "p.V"
  }


  #--
  name  <-  if(HS==3){
    c("1", "2", "3")
  } else if(HS==4){
   c("1", "2", "3", "4")
  } else if(HS==5){
    c("1", "2", "3", "4", "5")
  } else if(HS==6){
    c("1", "2", "3", "4", "5", "6")
  }
  plotmat(A = AA, pos = if(HS==6){NULL} else if (HS==5){c(1,HS-3,2)} else if(HS==4) {c(1,2,1)} else if(HS==3){c(1,2)}
          , name = name, box.type =  "square", curve = if(HS==3){0.0} else if(HS==6){.0} else {0.0},
          lwd = 0.9, cex.txt = 0.8, box.prop = 0.5, box.size = 0.08, self.shiftx = 2,box.lwd = 1,
          arr.pos = 0.4, shadow.size = 0, arr.length = 0.3,
          arr.type = "curved",
          box.cex = 0.8,
          main = "Markov model structure")

}
```


### 3 health states

```{r table1, echo=FALSE, message=FALSE, warnings=FALSE, results='asis'}
tabl <- "
|     |  1  |  2  |  3   |
|-|-|-|-|
|  1  |     | p.A |  p.Z |
|  2  |     |     |  p.Y |
|  3  |     |     |      |
"
cat(tabl) # output the table in a format good for HTML/PDF/docx conversion
first(HS=3)
```

### 4 health states

```{r table2, echo=FALSE, message=FALSE, warnings=FALSE, results='asis'}
tabl <- "
|  |  1  |  2  |  3   | 4   |
|-|-|-|-|-|
|  1  |     | p.A |  p.B | p.Z |
|  2  |     |     |  p.C | p.Y |
|  3  |     |     |      | p.X |
|  4  |     |     |      |     |
"
cat(tabl) # output the table in a format good for HTML/PDF/docx conversion
first(HS=4)
```

### 5 health states

```{r table3, echo=FALSE, message=FALSE, warnings=FALSE, results='asis'}
tabl <- "
|  |  1  |  2  |  3   | 4   | 5   |
|-----|-----|-----|-----|-----|-----|
|  1  |    | p.A |  p.B | p.D | p.Z |
|  2  |     |     |  p.C | p.E | p.Y |
|  3  |     |     |     | p.F | p.X |
|  4  |     |     |      |     | p.W |
|  5  |     |     |      |     |     |
"
cat(tabl) # output the table in a format good for HTML/PDF/docx conversion
first(HS=5)
```

### 6 health states

```{r table4, echo=FALSE, message=FALSE, warnings=FALSE, results='asis'}
tabl <- "
|  |  1  |  2  |  3   | 4   | 5   | 6   |
|-----|-----|-----|-----|-----|-----|-----|
|  1  |    | p.A |  p.B | p.D | p.G | p.Z |
|  2  |     |    |  p.C | p.E | p.H | p.Y |
|  3  |     |     |     | p.F | p.I | p.X |
|  4  |     |     |      |   | p.J | p.W |
|  5  |     |     |      |     |    | p.V |
|  6  |     |     |      |     |     |    |
"
cat(tabl) # output the table in a format good for HTML/PDF/docx conversion
first(HS=6)
```