Initial CircleCI

Author: StuartWheater

.circleci/config.yml

@@ -0,0 +1,68 @@
+# Copyright (c) 2024 Arjuna Technologies, Newcastle upon Tyne. All rights reserved.
+
+version: 2.1
+
+jobs:
+  dsbaseclient:
+    docker:
+      - image: cimg/base:current
+    resource_class: small
+    steps:
+      - checkout
+      - setup_remote_docker:
+          docker_layout_caching: true
+      - run: |
+          echo "Building"
+          echo "  Repo Name: " $CIRCLE_PROJECT_REPONAME
+          echo "  Branch:    " $CIRCLE_BRANCH
+          echo "  Tag:       " $CIRCLE_TAG
+      - run:
+          command: |
+              sudo apt-get update -y
+              sudo apt-get install -y r-base-core cmake
+      - run:
+          command: |
+              sudo apt-get install -y libxml2-dev libcurl4-openssl-dev libssl-dev libgsl-dev libgit2-dev
+              sudo apt-get install -y libharfbuzz-dev libfribidi-dev libmagick++-dev
+      - run:
+          command: |
+              sudo Rscript -e "install.packages('devtools', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('covr', dependencies=TRUE)"
+
+              sudo Rscript -e "install.packages('fields', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('meta', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('metafor', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('ggplot2', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('gridExtra', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('data.table', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('panelaggregation', dependencies=TRUE)"
+
+              sudo Rscript -e "install.packages('DSI', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('DSOpal', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('DSLite', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('MolgenisAuth', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('MolgenisArmadillo', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('DSMolgenisArmadillo', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('DescTools', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('e1071', dependencies=TRUE)"
+
+              sudo Rscript -e "install.packages('RANN', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('stringr', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('lme4', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('dplyr', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('reshape2', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('polycor', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('splines', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('gamlss', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('gamlss.dist', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('mice', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('childsds', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('xml2', dependencies=TRUE)"
+              sudo Rscript -e "install.packages('covr', dependencies=TRUE)"
+      - run:
+          command: |
+              sudo Rscript -e 'library(covr); options("default_driver"="OpalDriver"); covr::codecov("dsBaseClient", token="'$CODECOV_TOKEN'", quiet=FALSE)'
+workflows:
+  build:
+    jobs:
+      - dsbaseclient