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"uuid": "^9.0.0" + "uuid": "^14.0.0" }, "devDependencies": { "@types/uuid": "^9.0.0", - "@typescript-eslint/eslint-plugin": "^5.45.0", - "@typescript-eslint/parser": "^5.45.0", + "@typescript-eslint/eslint-plugin": "^8.62.1", + "@typescript-eslint/parser": "^8.62.1", "eslint": "^8.28.0", "eslint-config-prettier": "^10.0.1", "eslint-plugin-cypress": "^2.12.1", diff --git a/docs/docs/10-users/60-sessions/guides/00-environments/20-create-environment-with-custom-packages-installed.md b/docs/docs/10-users/60-sessions/guides/00-environments/20-create-environment-with-custom-packages-installed.md index 71ea28c169..37c3165e0b 100755 --- a/docs/docs/10-users/60-sessions/guides/00-environments/20-create-environment-with-custom-packages-installed.md +++ b/docs/docs/10-users/60-sessions/guides/00-environments/20-create-environment-with-custom-packages-installed.md @@ -25,6 +25,7 @@ There are multiple ways you can define a python environment for your Renku sessi - [Miniconda (`environment.yml`) (recommended)](#miniconda-environmentyml-recommended) - [Pip (`requirements.txt`)](#pip-requirementstxt) - [Poetry (`pyproject.toml`)](#poetry-pyprojecttoml) +- [uv (`pyproject.toml` and `uv.lock`)](#uv-pyprojecttoml-and-uvlock) See below for more details on how to use each of these systems. @@ -139,6 +140,38 @@ Note that poetry version `1.8.3` will be used. +#### uv (`pyproject.toml` and `uv.lock`) + +Include a `pyproject.toml` file and a `uv.lock` file at the root (top level) of your code repository. The buildpack will invoke `uv` to install the dependencies recorded in `uv.lock`. + +If you do not have a `uv.lock` file yet, you can generate one by running `uv lock` in your local project. + +:::info + +Renku sets the environment variable `UV_PROJECT_ENVIRONMENT` to `$RENKU_WORKING_DIR/.venv` in the session. This means the regular `python` command has access to everything installed with `uv add`, and you do not need to pass the `--active` flag to `uv` commands. + +::: + +
+Here is an example `pyproject.toml`: + + ```toml + [project] + name = "my-renku-project" + version = "0.1.0" + description = "" + readme = "README.md" + requires-python = ">=3.12" + dependencies = [ + "numpy>=2.2.2", + "pandas>=2.2.3", + "jupyterlab>=4.3.5", + "scipy>=1.15.1", + ] + ``` + +
+ ### Defining an R Environment with renv Renku can build an R environment from an [`renv`](https://rstudio.github.io/renv/) lockfile. diff --git a/docs/package-lock.json b/docs/package-lock.json index 40c15b1741..bcaf79e0a1 100644 --- a/docs/package-lock.json +++ b/docs/package-lock.json @@ -12911,9 +12911,9 @@ } }, "node_modules/lodash": { - "version": "4.17.21", - "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.21.tgz", - "integrity": "sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg==", + "version": "4.17.23", + "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.23.tgz", + "integrity": "sha512-LgVTMpQtIopCi79SJeDiP0TfWi5CNEc/L/aRdTh3yIvmZXTnheWpKjSZhnvMl8iXbC1tFg9gdHHDMLoV7CnG+w==", "license": "MIT" }, "node_modules/lodash-es": { diff --git a/global-images/datascience/poetry.lock b/global-images/datascience/poetry.lock index e1b7274a8d..0c602ca5a0 100644 --- a/global-images/datascience/poetry.lock +++ b/global-images/datascience/poetry.lock @@ -1,4 +1,35 @@ -# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.4.1 and should not be changed by hand. + +[[package]] +name = "annotated-doc" +version = "0.0.4" +description = "Document parameters, class attributes, return types, and variables inline, with Annotated." +optional = false +python-versions = ">=3.8" +groups = ["main"] +files = [ + {file = "annotated_doc-0.0.4-py3-none-any.whl", hash = "sha256:571ac1dc6991c450b25a9c2d84a3705e2ae7a53467b5d111c24fa8baabbed320"}, + {file = "annotated_doc-0.0.4.tar.gz", hash = "sha256:fbcda96e87e9c92ad167c2e53839e57503ecfda18804ea28102353485033faa4"}, +] + +[[package]] +name = "anyio" +version = "4.14.1" +description = "High-level concurrency and networking framework on top of asyncio or Trio" +optional = false +python-versions = ">=3.10" +groups = ["main"] +files = [ + {file = "anyio-4.14.1-py3-none-any.whl", hash = "sha256:4e5533c5b8ff0a24f5d7a176cbe6877129cd183893f66b537f8f227d10527d72"}, + {file = "anyio-4.14.1.tar.gz", hash = "sha256:8d648a3544c1a700e3ff78615cd679e4c5c3f149904287e73687b2596963629e"}, +] + +[package.dependencies] +idna = ">=2.8" +typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""} + +[package.extras] +trio = ["trio (>=0.32.0)"] [[package]] name = "certifi" @@ -13,107 +44,20 @@ files = [ ] [[package]] -name = "charset-normalizer" -version = "3.4.2" -description = "The Real First Universal Charset Detector. 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"sentencepiece (>=0.1.91,!=0.1.92)", "tokenizers (>=0.22.0,<=0.23.0)", "torch (>=2.2)", "tqdm (>=4.27)"] +timm = ["timm (>=1.0.23)"] +torch = ["accelerate (>=1.1.0)", "torch (>=2.4)"] video = ["av"] -vision = ["Pillow (>=10.0.1,<=15.0)"] +vision = ["Pillow (>=10.0.1,<=15.0)", "torchvision"] + +[[package]] +name = "typer" +version = "0.25.1" +description = "Typer, build great CLIs. Easy to code. Based on Python type hints." +optional = false +python-versions = ">=3.10" +groups = ["main"] +files = [ + {file = "typer-0.25.1-py3-none-any.whl", hash = "sha256:75caa44ed46a03fb2dab8808753ffacdbfea88495e74c85a28c5eefcf5f39c89"}, + {file = "typer-0.25.1.tar.gz", hash = "sha256:9616eb8853a09ffeabab1698952f33c6f29ffdbceb4eaeecf571880e8d7664cc"}, +] + +[package.dependencies] +annotated-doc = ">=0.0.2" +click = ">=8.2.1" +rich = ">=13.8.0" +shellingham = ">=1.3.0" [[package]] name = "typing-extensions" @@ -1588,6 +1587,7 @@ description = "Provider of IANA time zone data" optional = false python-versions = ">=2" groups = ["main"] +markers = "sys_platform == \"win32\" or sys_platform == \"emscripten\"" files = [ {file = "tzdata-2025.2-py2.py3-none-any.whl", hash = "sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8"}, {file = "tzdata-2025.2.tar.gz", hash = "sha256:b60a638fcc0daffadf82fe0f57e53d06bdec2f36c4df66280ae79bce6bd6f2b9"}, @@ -1595,14 +1595,14 @@ files = [ [[package]] name = "urllib3" -version = "2.6.3" +version = "2.7.0" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false -python-versions = ">=3.9" +python-versions = ">=3.10" groups = ["main"] files = [ - {file = "urllib3-2.6.3-py3-none-any.whl", hash = "sha256:bf272323e553dfb2e87d9bfd225ca7b0f467b919d7bbd355436d3fd37cb0acd4"}, - {file = "urllib3-2.6.3.tar.gz", hash = "sha256:1b62b6884944a57dbe321509ab94fd4d3b307075e0c2eae991ac71ee15ad38ed"}, + {file = "urllib3-2.7.0-py3-none-any.whl", hash = "sha256:9fb4c81ebbb1ce9531cce37674bbc6f1360472bc18ca9a553ede278ef7276897"}, + {file = "urllib3-2.7.0.tar.gz", hash = "sha256:231e0ec3b63ceb14667c67be60f2f2c40a518cb38b03af60abc813da26505f4c"}, ] [package.extras] @@ -1614,4 +1614,4 @@ zstd = ["backports-zstd (>=1.0.0) ; python_version < \"3.14\""] [metadata] lock-version = "2.1" python-versions = ">=3.12,<3.14" -content-hash = "a98ffbc7e41f23684372268d7ecbb592f3bdb50b61b5914670f51e0e7e14bdaf" +content-hash = "7e9f32fd98898873d2d52aa674369d6a7490be7718a7fee5977de4e84ca7a7d4" diff --git a/global-images/datascience/pyproject.toml b/global-images/datascience/pyproject.toml index 2415ea22ee..50d28d17c9 100644 --- a/global-images/datascience/pyproject.toml +++ b/global-images/datascience/pyproject.toml @@ -9,12 +9,12 @@ package-mode = false [tool.poetry.dependencies] python = ">=3.12,<3.14" -pandas = "^2.3.3" +pandas = ">=2.3.3,<4.0.0" numpy = "^2.4.0" scipy = "^1.16.3" scikit-learn = "^1.8.0" plotly = "^6.5.0" -transformers = "^4.57.3" +transformers = ">=4.57.3,<6.0.0" matplotlib = "^3.10.8" seaborn = "^0.13.2" diff --git a/helm-chart/renku/values.yaml b/helm-chart/renku/values.yaml index df5b455661..41b0dd80eb 100644 --- a/helm-chart/renku/values.yaml +++ b/helm-chart/renku/values.yaml @@ -8,6 +8,7 @@ ## Global variables ## Shared values/secrets +# TODO global: ## YAML string that contains all application level Renku configuration options. platformConfig: | @@ -1281,17 +1282,17 @@ dataService: pullPrivateSecretName: "renku-pull-private-docker-secret" ## The builder image (see https://buildpacks.io/docs/for-platform-operators/concepts/builder/) - builderImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/selector:0.8.0" + builderImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/selector:0.9.0" ## The run image (see https://buildpacks.io/docs/for-platform-operators/concepts/base-images/) - runImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/run-image:0.8.0" + runImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/run-image:0.9.0" ## The name of the BuildStrategy to use for image builds. strategyName: renku-buildpacks-v3 ## Configuration overrides for specific target platforms platformOverrides: {} # linux/arm64: - # builderImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/cuda-selector:0.8.0" - # runImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/cuda-run-image:0.8.0" + # builderImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/cuda-selector:0.9.0" + # runImage: "ghcr.io/swissdatasciencecenter/renku-frontend-buildpacks/cuda-run-image:0.9.0" # strategyName: renku-buildpacks-v3 # nodeSelector: # kubernetes.io/arch: arm64 diff --git a/scripts/init-db/requirements.txt b/scripts/init-db/requirements.txt index f8a1f8caf3..228c2abde6 100644 --- a/scripts/init-db/requirements.txt +++ b/scripts/init-db/requirements.txt @@ -1,4 +1,4 @@ psycopg2-binary==2.9.6 tenacity==8.2.2 -requests==2.31.0 +requests==2.32.4 kubernetes==24.2.0 diff --git a/scripts/platform-init/requirements.txt b/scripts/platform-init/requirements.txt index ede9653b36..de57ae9dba 100644 --- a/scripts/platform-init/requirements.txt +++ b/scripts/platform-init/requirements.txt @@ -1,3 +1,3 @@ kubernetes==29.0.0 -cryptography==42.0.5 +cryptography==46.0.6 pyyaml==6.0.1