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Copy file name to clipboardExpand all lines: about.md
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@@ -31,7 +31,7 @@ OpenEM will target both researchers producing EM data and consumers of open data
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Our primary goal is to strengthen co-operation and innovation in the field of electron microscopy.
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OpenEM enables collaboration and data exchange in specific groups by providing a platform for data exchange and streamlining data collection processes. OpenEM ensures integration with globally recognised platforms and closes gaps in functionality and application.
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OpenEM enables collaboration and data exchange in specific groups by providing a platform for data exchange and streamlining data collection processes. OpenEM ensures integration with globally recognized platforms and closes gaps in functionality and application.
Copy file name to clipboardExpand all lines: documentation/admin/general.md
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@@ -28,7 +28,7 @@ The long-term storage is managed by CSCS or ETHZ. The data is archived there for
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### Development
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The maintenance and further development of the components is ensured by PSI and the open source community. Individual further development requests can be realised by the user due to the open source code.
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The maintenance and further development of the components is ensured by PSI and the open source community. Individual further development requests can be realized by the user due to the open source code.
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<!-- Jump to next page -->
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{% include documentationStepper/forwardBackward.html showBack=true showNext=true %}
|`FACILITY`|`myfacility`| Facility name; used in some naming conventions | Yes |
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|`INGESTOR_VERSION`|`v1.0.0 or latest`| Version of the Ingstor | Yes |
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|`INGESTOR_VERSION`|`v1.0.0 or latest`| Version of the Ingestor| Yes |
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|`INGESTOR_DOMAIN`|`https://ingestor.facility.com`| URL to the facility's ingestor | Yes |
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|`HOST_COLLECTION_PATH`|`/server/data`| Path to the directory on the host system to the data | Yes |
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|`HOST_COLLECTION_NAME`|`DataServer`| Name of the data directory that will appear in the UI | Yes |
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|`GLOBUS_SOURCE_FACILITY`|`DCIL`| Globus source facility tag, one of DCIL, UNIBAS, UNIGE, UNIBE | Yes |
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|`GLOBUS_COLLECTION_ROOT_PATH`|`/server/data`| Path of the collection passed to Globus, needs to match HOST_COLLECTION_PATH | yes |
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|`KEYCLOAK_CLIENT_ID`|`openem-ingestor-DCIL`| Keycloak client for this facility's ingestor, one of openem-ingestor-DCIL, openem-ingestor-UNIBAS, etc. | Yes |
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|`LIFESCIENCE_EXTRACTOR_ADDITIONAL_PARAMS`|`--cs 2.7`| Optional, additional parameters for the life scienece metadata extractor | yes |
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|`LIFESCIENCE_EXTRACTOR_ADDITIONAL_PARAMS`|`--cs 2.7`| Optional, additional parameters for the life science metadata extractor| yes |
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|`GLOBUS_DESTINATION_FACILITY`|`PSI`| Destination facility for Globus, one of PSI, PSI_QA, PS_DEV | No |
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|`SCICAT_BACKEND_URL`|`https://dacat.psi.ch`| URL of Scicat's backend | No |
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|`SCICAT_FRONTEND_URL`|`https://discovery.psi.ch`| URL of Scicat's frontend | No |
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Updating schemas can be done by restarting the ingestor if the schema URLs are pointing to `latest` and not a specific version. Otherwise, the ingestor
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needs to be stopped, the URL adapted and the ingestor started again.
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#### User Indentity
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#### User Identity
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In case the ingestor needs to run using as a specific user, add the following variables to th `.env` file
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