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fix: remove charge-imbalanced duplicate lipoxygenase reactions (#348) #1040

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fix: remove charge-imbalanced duplicate lipoxygenase reactions (#348) #1040

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5 changes: 5 additions & 0 deletions data/deprecatedIdentifiers/deprecatedReactions.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -401,3 +401,8 @@ MAR07851 DNDPt62m DNDPt62m MNXR97327 HMR_7851 RCR20193 0 HMR_7851
MAR07852 DNDPt63m DNDPt63m MNXR97676 HMR_7852 RCR20146 0 HMR_7852
MAR07853 DNDPt6m DNDPt6m MNXR97677 HMR_7853 RCR20194 0 HMR_7853
MAR07854 DNDPt7m DNDPt7m MNXR97175 HMR_7854 RCR20122 0 HMR_7854
MAR01364 RE3452C HMR_1364 RCR13344 0 HMR_1364
MAR01355 RE3455C HMR_1355 RCR13335 0 HMR_1355
MAR01358 RE3449C HMR_1358 RCR13338 0 HMR_1358
MAR01361 RE3458C HMR_1361 RCR13341 0 HMR_1361
MAR01405 RE2852C HMR_1405 HMR_1405 RCR13691 0 HMR_1405
65 changes: 0 additions & 65 deletions model/Human-GEM.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -119725,19 +119725,6 @@
- references: "PMID:11641243"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01355"
- metabolites: !!omap
- MAM01214c: 1
- MAM01362c: -1
- MAM02039c: 1
- MAM02630c: -1
- lower_bound: 0
- upper_bound: 1000
- rxnFrom: "HMRdatabase"
- references: "PMID:2123555"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01356"
- metabolites: !!omap
Expand Down Expand Up @@ -119766,19 +119753,6 @@
- references: "PMID:2123555"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01358"
- metabolites: !!omap
- MAM01246c: 1
- MAM01362c: -1
- MAM02039c: 1
- MAM02631c: -1
- lower_bound: 0
- upper_bound: 1000
- rxnFrom: "HMRdatabase"
- references: "PMID:2123555"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01359"
- metabolites: !!omap
Expand Down Expand Up @@ -119807,19 +119781,6 @@
- references: "PMID:2123555"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01361"
- metabolites: !!omap
- MAM00302c: 1
- MAM01362c: -1
- MAM02039c: 1
- MAM02631c: -1
- lower_bound: 0
- upper_bound: 1000
- rxnFrom: "HMRdatabase"
- references: "PMID:2123555"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01362"
- metabolites: !!omap
Expand Down Expand Up @@ -119847,19 +119808,6 @@
- references: "PMID:2123555"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01364"
- metabolites: !!omap
- MAM00335c: 1
- MAM01362c: -1
- MAM02039c: 1
- MAM02631c: -1
- lower_bound: 0
- upper_bound: 1000
- rxnFrom: "HMRdatabase"
- references: "PMID:2123555"
- subsystem: "Prostaglandin biosynthesis"
- confidence_score: 0
- !!omap
- id: "MAR01365"
- metabolites: !!omap
Expand Down Expand Up @@ -127689,19 +127637,6 @@
- references: "PMID:10694406"
- subsystem: "Isolated"
- confidence_score: 0
- !!omap
- id: "MAR01405"
- metabolites: !!omap
- MAM00275c: 1
- MAM01689c: -1
- MAM02039c: 1
- MAM02631c: -1
- lower_bound: 0
- upper_bound: 1000
- rxnFrom: "HMRdatabase"
- references: "PMID:10694406"
- subsystem: "Isolated"
- confidence_score: 0
- !!omap
- id: "MAR01406"
- metabolites: !!omap
Expand Down
5 changes: 0 additions & 5 deletions model/reactions.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -3681,16 +3681,12 @@ MAR01346 R09536 RE1978C RE1978C MNXR103590 HMR_1346 RCR14606 0 RHEA:26136 H
MAR01347 RE2563C RE2563C MNXR103699 HMR_1347 RCR10893 0 HMR_1347
MAR01350 RE2050C RE2050C MNXR103599 HMR_1350 RCR13334 0 HMR_1350
MAR01352 RE2051C RE2051C MNXR103600 HMR_1352 RCR14607 0 HMR_1352
MAR01355 RE3455C HMR_1355 RCR13335 0 HMR_1355
MAR01356 RE3457C RE3457C HMR_1356 RCR13336 0 HMR_1356
MAR01357 RE3456C RE3456C HMR_1357 RCR13337 0 HMR_1357
MAR01358 RE3449C HMR_1358 RCR13338 0 HMR_1358
MAR01359 RE3451C RE3451C HMR_1359 RCR13339 0 HMR_1359
MAR01360 RE3450C RE3450C HMR_1360 RCR13340 0 HMR_1360
MAR01361 RE3458C HMR_1361 RCR13341 0 HMR_1361
MAR01362 RE3460C RE3460C HMR_1362 RCR13342 0 HMR_1362
MAR01363 RE3459C RE3459C HMR_1363 RCR13343 0 HMR_1363
MAR01364 RE3452C HMR_1364 RCR13344 0 HMR_1364
MAR01365 RE3454C RE3454C HMR_1365 RCR13345 0 HMR_1365
MAR01366 RE3453C RE3453C HMR_1366 RCR13346 0 HMR_1366
MAR01367 RE3533C RE3533C MNXR103951 HMR_1367 RCR13347 0 HMR_1367
Expand Down Expand Up @@ -4196,7 +4192,6 @@ MAR01896 BILDGLCURte r0814 BILDGLCURte MNXR96252 HMR_1896 RCR40175 3.A.1.208.
MAR01897 HMR_1897 HMR_1897 RCR40343 3.A.1.208.2;3.A.1.208.9;3.A.1.208.7 0 HMR_1897
MAR01403 RE2849C HMR_1403;RE2849C MNXR103728 HMR_1403 RCR13690 0 HMR_1403
MAR01404 RE2854C HMR_1404;RE2854C MNXR103732 HMR_1404 RCR14647 0 HMR_1404
MAR01405 RE2852C HMR_1405 HMR_1405 RCR13691 0 HMR_1405
MAR01406 RE2848C HMR_1406;RE2848C MNXR103727 HMR_1406 RCR13692 0 HMR_1406
MAR01407 RE2850C HMR_1407;RE2850C MNXR103729 HMR_1407 RCR13693 0 HMR_1407
MAR01408 RE2853C HMR_1408;RE2853C MNXR103731 HMR_1408 RCR13694 0 HMR_1408
Expand Down
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