diff --git a/data/testResults/README.md b/data/testResults/README.md index 1b3495b5..5a9597e0 100644 --- a/data/testResults/README.md +++ b/data/testResults/README.md @@ -4,7 +4,7 @@ The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/ The test results shown here were obtained by the GitHub Actions run in: -- **PR #1035** (QC) +- **PR #1047** (QC) - **PR #973** (gene essentiality) The results will be updated by any subsequent pull request. Summary results are shown as a comment in the corresponding pull request. diff --git a/data/testResults/macaw_results.csv b/data/testResults/macaw_results.csv index 5b8d58da..b5d5687b 100644 --- a/data/testResults/macaw_results.csv +++ b/data/testResults/macaw_results.csv @@ -12876,3 +12876,5 @@ MAR20188,MAM01098m <=> MAM01098c,MAM01098c;MAM01098m,ok,ok,ok,N/A MAR20189,MAM01329c + 2 MAM01824m + 5 MAM02039m --> MAM01328c + 2 MAM01826m + 4 MAM02039i,MAM01328c;MAM01329c,ok,ok,ok,N/A MAR20190,MAM01329c + MAM02039c + MAM02553c --> MAM01328c + MAM02552c,MAM01328c;MAM01329c,ok,ok,ok,N/A MAR20191,MAM01371m + MAM01974m + MAM02578m --> MAM01285m + MAM01975m + MAM02751m,ok,ok,ok,ok,N/A +MAR20193,MAM00180c <=> MAM00180e,ok,ok,ok,ok,N/A +MAR20194,MAM00180e <=> ,ok,ok,ok,ok,N/A diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 681c03b0..59835f28 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -60031,6 +60031,13 @@ - formula: "C10H16N3O6S2" - charge: -1 - inchis: "InChI=1S/C10H17N3O6S2/c11-5(10(18)19)1-2-7(14)13-6(4-21-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/t5-,6-/m0/s1" + - !!omap + - id: "MAM00180e" + - name: "(S)-dihydroorotate" + - compartment: "e" + - formula: "C5H5N2O4" + - charge: -1 + - metFrom: "HMRdatabase" - reactions: - !!omap - id: "MAR03905" @@ -245971,6 +245978,26 @@ - references: "PMID:11080211;PMID:1356223;PMID:14583610;PMID:16213501;PMID:7595668;PMID:8838581;PMID:9053810" - subsystem: "Alanine, aspartate and glutamate metabolism" - confidence_score: 0 + - !!omap + - id: "MAR20193" + - name: "(S)-dihydroorotate transport, cytosol to extracellular" + - metabolites: !!omap + - MAM00180c: -1 + - MAM00180e: 1 + - lower_bound: -1000 + - upper_bound: 1000 + - references: "PMID:30643150" + - subsystem: "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20194" + - name: "Exchange of (S)-dihydroorotate" + - metabolites: !!omap + - MAM00180e: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - subsystem: "Exchange/demand reactions" + - confidence_score: 0 - genes: - !!omap - id: "ENSG00000000419" diff --git a/model/metabolites.tsv b/model/metabolites.tsv index 928d9f09..56d65ace 100644 --- a/model/metabolites.tsv +++ b/model/metabolites.tsv @@ -8459,3 +8459,4 @@ MAM00077e MAM00077 HMDB0000795 CHEBI:51340 123929 LMPR0104010022 CE2416 MNXM MAM20084m MAM20084 4fe4s CHEBI:33722 6398953 MNXM732007 MAM20085m MAM20085 2fe2s CHEBI:33737 5460691 MNXM1107419 MAM20086m MAM20086 C17267 CHEBI:52857 44176418 MNXM2032 +MAM00180e MAM00180 dhor__S C00337 CHEBI:17025 HC00285 dhor_S MNXM252 diff --git a/model/reactions.tsv b/model/reactions.tsv index e5b1099e..dc345447 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -12876,3 +12876,5 @@ MAR20188 0 MAR20189 0 MAR20190 0 MAR20191 R00253 GLNS R00253C r0077 GLNS MNXR100024 HMR_3890 RCR10506 0 RHEA:16169 HMR_3890 +MAR20193 0 +MAR20194 0