fix: getKEGGModelForOrganism refer to KEGG116

Author: edkerk

doc/external/kegg/getKEGGModelForOrganism.html

@@ -618,7 +618,7 @@ <h2><a name="_source"></a>SOURCE CODE <a href="#_top"><img alt="^" border="0" sr
 0334         <span class="keyword">else</span>
 0335             hmmIndex=strcmp(dataDir,hmmOptions);
 0336             <span class="keyword">if</span> ~any(hmmIndex)
-0337                 error([<span class="string">'Pre-trained HMMs are only provided with proteins clustered at 90% sequence identity (i.e. prok90_kegg105 and euk90_kegg105). '</span> <span class="keyword">...</span>
+0337                 error([<span class="string">'Pre-trained HMMs are only provided with proteins clustered at 90% sequence identity (i.e. prok90_kegg116 and euk90_kegg116). '</span> <span class="keyword">...</span>
 0338                     <span class="string">'Use either of these datasets, or otherwise download the relevant sequence data from KEGG to train HMMs with your desired sequence identity'</span>])
 0339             <span class="keyword">else</span>
 0340                 fprintf(<span class="string">'Downloading the HMMs archive file... '</span>);

doc/tutorial/index.html

@@ -24,9 +24,7 @@ <h2>Matlab files in this directory:</h2>
 <h2>Other Matlab-specific files in this directory:</h2>
 <ul style="list-style-image:url(../matlabicon.gif)">
 <li>empty.mat</li><li>iMK1208+suppInfo.mat</li><li>pathway.mat</li><li>pcPathway.mat</li></ul>
-<h2>Subsequent directories:</h2>
-<ul style="list-style-image:url(../matlabicon.gif)">
-<li>struct_conversion</li></ul>
+
 
 <hr><address>Generated by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
 </body>

external/kegg/getKEGGModelForOrganism.m

@@ -334,7 +334,7 @@
         else
             hmmIndex=strcmp(dataDir,hmmOptions);
             if ~any(hmmIndex)
-                error(['Pre-trained HMMs are only provided with proteins clustered at 90% sequence identity (i.e. prok90_kegg105 and euk90_kegg105). ' ...
+                error(['Pre-trained HMMs are only provided with proteins clustered at 90% sequence identity (i.e. prok90_kegg116 and euk90_kegg116). ' ...
                     'Use either of these datasets, or otherwise download the relevant sequence data from KEGG to train HMMs with your desired sequence identity'])
             else
                 fprintf('Downloading the HMMs archive file... ');