Skip to content

chore(release): MIT license + v0.1.0a1 #15

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
edkerk merged 1 commit into from
May 30, 2026
Merged

chore(release): MIT license + v0.1.0a1 #15

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
17 changes: 17 additions & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,23 @@ Milestones in the raven-python port. For function-level status see
[docs/raven_migration.md](https://github.com/SysBioChalmers/raven-python/blob/develop/docs/reference/migration.md); for open work see
[docs/todo.md](https://github.com/SysBioChalmers/raven-python/blob/develop/docs/reference/todo.md).

## 0.1.0a1 — 2026-05-30

First alpha release. Covers the functional scope of RAVEN built on cobrapy:
de-novo reconstruction (KEGG / homology), context-specific modeling (tINIT / ftINIT),
metabolic-task validation, connectivity gap-filling, HPA omics ingestion, sub-cellular
localisation, N-model comparison, reporter metabolites, FSEOF, flux sampling, and the
RAVEN-style I/O formats (YAML / SIF / Excel). Validated against MATLAB RAVEN on Human-GEM
(Jaccard 0.975–0.980).

* **Licensing:** released under the **MIT** license (previously GPL-3.0-or-later).
* **Docs:** Sphinx + MyST documentation site (sources under `docs/`).
* Not yet implemented: visualization (`plotting/`), metabolomics-based (f)tINIT scoring,
and published binary / KEGG-artefact release bundles. See the README and
[docs/todo.md](https://github.com/SysBioChalmers/raven-python/blob/develop/docs/reference/todo.md).

The milestone sections below record the incremental development history leading to this release.

## Infrastructure

* **GitHub Actions CI** ([.github/workflows/ci.yml](https://github.com/SysBioChalmers/raven-python/blob/develop/.github/workflows/ci.yml)) —
Expand Down
Loading
Loading