raven-toolbox/data/manifest.example.json at develop · SysBioChalmers/raven-toolbox · GitHub

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{
  "manifest_version": 1,
  "generated": "2026-06-16",
  "data": {
    "kegg": {
      "version": "kegg118",
      "description": "KEGG reference model + KO/reaction tables (core bundle), taxonomy, and prokaryote/eukaryote HMM libraries for getKEGGModelForOrganism.",
      "license": "Derived from the KEGG database; redistributed with permission from KEGG.",
      "source": "https://github.com/SysBioChalmers/raven-data/releases/tag/kegg118",
      "files": {
        "kegg118_core.tar.gz": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/kegg118/kegg118_core.tar.gz",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "kegg118_eukaryotes.hmm.gz": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/kegg118/kegg118_eukaryotes.hmm.gz",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "kegg118_prokaryotes.hmm.gz": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/kegg118/kegg118_prokaryotes.hmm.gz",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "kegg118_taxonomy.gz": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/kegg118/kegg118_taxonomy.gz",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        }
      }
    }
  },
  "binaries": {
    "blast": {
      "version": "2.17.0",
      "provides": [
        "blastp",
        "makeblastdb"
      ],
      "platforms": {
        "linux-x86_64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/blast-2.17.0/blast-2.17.0-linux-x86_64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "macos-arm64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/blast-2.17.0/blast-2.17.0-macos-arm64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "windows-x86_64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/blast-2.17.0/blast-2.17.0-windows-x86_64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        }
      },
      "description": "NCBI BLAST+ (homology reconstruction). Windows ZIP bundles nghttp2.dll.",
      "license": "Public domain (NCBI)."
    },
    "diamond": {
      "version": "2.1.17",
      "provides": [
        "diamond"
      ],
      "platforms": {
        "linux-x86_64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/diamond-2.1.17/diamond-2.1.17-linux-x86_64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "macos-arm64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/diamond-2.1.17/diamond-2.1.17-macos-arm64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "windows-x86_64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/diamond-2.1.17/diamond-2.1.17-windows-x86_64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        }
      },
      "description": "DIAMOND protein aligner (homology reconstruction).",
      "license": "GPL-3.0-only."
    },
    "hmmer": {
      "version": "3.4.0",
      "provides": [
        "hmmsearch"
      ],
      "platforms": {
        "windows-x86_64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/hmmer-3.3.2/hmmer-3.3.2-windows-x86_64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "linux-x86_64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/hmmer-3.4.0/hmmer-3.4.0-linux-x86_64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        },
        "macos-arm64": {
          "url": "https://github.com/SysBioChalmers/raven-data/releases/download/hmmer-3.4.0/hmmer-3.4.0-macos-arm64.zip",
          "sha256": "0000000000000000000000000000000000000000000000000000000000000000",
          "bytes": 0
        }
      },
      "description": "HMMER hmmsearch (KEGG HMM query). Linux/macOS 3.4.0; Windows is the native 3.3.2 build (Cygwin, bundles cygwin1.dll) \u2014 reads the same HMMER3/f format.",
      "license": "BSD-3-Clause."
    }
  }
}