TOMToolkit · jchate6 · Mar 24, 2026 · Mar 24, 2026 · Mar 24, 2026 · Mar 24, 2026
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -1,10 +1,6 @@
 include README.md
 recursive-include tom_common/templates *
 recursive-include tom_common/static *
-recursive-include tom_alerts/templates *
-recursive-include tom_alerts/static *
-recursive-include tom_catalogs/templates *
-recursive-include tom_catalogs/static *
 recursive-include tom_targets/templates *
 recursive-include tom_targets/static *
 recursive-include tom_setup/templates *

diff --git a/README-dev.md b/README-dev.md
@@ -169,7 +169,6 @@ Releases are managed by the TOM Toolkit team unless otherwise specified.
 - `tom_publications` - Provides support for generating LaTeX summaries of target and observation data. Deprecated.
 - `skip-django` - Provides Plotly Dash Single-Page app for Skip interaction. Deprecated, to be replaced by VueJS components.
 - `tom-demo-frontend` - Prototype for implementation of pure VueJS app rather than using django-webpack. Patterned after `science-archive-frontend`.
-- `tom_alerts_dash` - Provides Plotly Dash single-page app for broker interaction. Deprecated, should be replaced by an Django app with simple plots instead. Also out of date with `django-plotly-dash`, and needs to be updated to use pattern-matching callbacks.
 
 #### Archived
 
@@ -239,7 +238,6 @@ The [documentation](https://tom-toolkit.readthedocs.io/en/stable/) is built on n
 | `skip-django`       | No     | No        | No         | TOM-Team            |
 | `tom-demo-frontend` | N/A    | N/A       | No         | N/A                 |
 | `tt-component-lib`  | No     | N/A       | No         | N/A                 |
-| `tom_alerts_dash`   | Yes    | Yes       | Yes        | TOM Team            |
 | `tom_antares`       | Yes    | Yes       | Yes        | TOM Team            |
 | `tom_base`          | Yes    | >89%      | Yes        | TOM Team            |
 | `tom_calibrations`  | No     | No        | No         | TOM Team            |

diff --git a/README.md b/README.md
@@ -69,13 +69,40 @@ Please review our [code of conduct](CODE_OF_CONDUCT.md) for information about wh
 For development information targeted at the maintainers of the project, please see [README-dev.md](README-dev.md).
 
 ## Plugins
-Our philosophy is to keep the TOM as lightweight and adaptable as possible.  
 Different TOM systems have different science goals and sometimes need 
 different functions. Rather than require users to support all 
 dependencies from all possible functions, we support a range of optional 
 plugin modules for the Toolkit.  Have a look at our [list of plugins](https://tom-toolkit.readthedocs.io/en/stable/api/plugins.html) 
 see which would benefit your science goals. 
 
+### Antares
+
+The [tom-antares](https://github.com/TOMToolkit/tom_antares) plugin adds support
+for querying the Antares broker for targets of interest.
+
+### tom_nonsidereal_airmass
+
+The [tom_nonsidereal_airmass](https://github.com/TOMToolkit/tom_nonsidereal_airmass) plugin provides a templatetag
+that supports plotting for non-sidereal objects. The plugin is fully supported by the TOM Toolkit team; however,
+non-sidereal visibility calculations require the PyEphem library, which is minimally supported while its successor
+is in development. The library used for the TOM Toolkit sidereal visibility, astroplan, does not yet support
+non-sidereal visibility calculations.
+
+### tom-lt
+
+This module provides the ability to submit observations to the Liverpool Telescope Phase 2 system. It is in a very alpha
+state, with little error handling and minimal instrument options, but can successfully submit well-formed observation
+requests.
+
+[Github](https://github.com/TOMToolkit/tom_lt)
+
+### tom_registration
+
+The [tom_registration](https://github.com/TOMToolkit/tom_registration) plugin introduces support for two TOM registration
+flows--an open registration, and a registration that requires administrator approval.
+Our philosophy is to keep the TOM as lightweight and adaptable as possible.  
+
+
 ## About the TOM Toolkit
 
 The TOM Toolkit is managed by Las Cumbres Observatory, with generous

diff --git a/docs/_static/common_interface.png b/docs/_static/common_interface.png
diff --git a/docs/_static/custom.css b/docs/_static/custom.css
@@ -1,7 +1,26 @@
+/* TOM Toolkit Branding Colors */
+/* --primary: #017792;       /* TOM Toolkit logo colors */
+/* --color-primary: #017792; */
+/* --primary-light: #00a3c8; */
+
+[data-theme="light"] {
+    --color-primary: #017792;
+    --color-header-background: #00a3c8;
+}
+[data-theme="dark"] {
+    --color-primary: #017792;
+    --color-background: #00a3c8;
+}
+
 div.partners {
   text-align: center;
 }
 
 a.hs {
   padding-right: 10%;
-}
+}
+
+.toctree-l1 > a[href*="getting_started"] {
+    color: #017792 !important;
+    font-weight: bold;
+}
diff --git a/docs/_static/dataservices_doc/advanced_form.png b/docs/_static/dataservices_doc/advanced_form.png
diff --git a/docs/_static/dataservices_doc/query_form_collapsed.png b/docs/_static/dataservices_doc/query_form_collapsed.png
diff --git a/docs/_static/managing_data/data_upload_form.png b/docs/_static/managing_data/data_upload_form.png
diff --git a/docs/_static/observation_module/target_detail_observe_buttons.png b/docs/_static/observation_module/target_detail_observe_buttons.png
diff --git a/docs/_static/observation_module/target_moon_separation_plot.png b/docs/_static/observation_module/target_moon_separation_plot.png
diff --git a/docs/_static/observation_module/target_visibility_tool.png b/docs/_static/observation_module/target_visibility_tool.png
diff --git a/docs/_static/target_sources.png b/docs/_static/target_sources.png
diff --git a/docs/api/affiliated.rst b/docs/api/affiliated.rst
diff --git a/docs/api/management_commands.rst b/docs/api/management_commands.rst
@@ -1,25 +1,37 @@
 Commands
 ========
 
-**********
-tom_alerts
-**********
+****************
+tom_dataproducts
+****************
+
+ - `downloaddata.py` - Downloads available data for all completed observations.
+
+ - `updatereduceddata.py` - Gets and updates time-series data for a target with data extracted from data services. This will search existing data for sources that match installed data services and check those data services for new data.
 
-runbrokerquery.py - Runs saved alert queries and saves the results as Targets.
 
 ****************
-tom_dataproducts
+tom_dataservices
 ****************
 
-downloaddata.py - Downloads available data for all completed observations.
+ - `listqueries.py` - Creates a table of saved DataService queries.
 
-updatereduceddata - Gets and updates time-series data for alert-generated targets from the original alert source. Can optionally specify a target id.
+ - `rundataquery.py` - Runs saved dataservice queries and saves the results as Targets.
 
 
 ****************
-tom_dataproducts
+tom_observations
 ****************
 
-runcadencestrategy.py - Entry point for running cadence strategies.
+ - `runcadencestrategy.py` - Entry point for running cadence strategies.
+
+ - `updatestatus.py` - Updates the status of each observation request in the TOM. Target id can be specified to update the status for all observations for a single target.
+
+
+***********
+tom_targets
+***********
+
+ - `converttargetextras.py` - A Helper command to convert target extras into UserDefinedTarget Fields
 
-updatestatus.py - Updates the status of each observation request in the TOM. Target id can be specified to update the status for all observations for a single target.
+ - `setdefaultextras.py` - Adds the default TargetExtra value to all Targets that do not have the provided TargetExtra
diff --git a/docs/api/modules.rst b/docs/api/modules.rst
@@ -3,15 +3,13 @@
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-API Documentation
-=================
+API Module Documentation
+========================
 
 .. toctree::
   :maxdepth: 1
   :includehidden:
 
-  tom_alerts/index
-  tom_catalogs/index
   tom_common/index
   tom_dataproducts/index
   tom_dataservices/index

diff --git a/docs/api/plugins.md b/docs/api/plugins.md