fix linting

# Conflicts:
#	docs/ADD_NEW_DATA.md
#	docs/USE_EXISTING_DATA.md

Author: mashehu

README.md

@@ -1,4 +1,5 @@
 # ![nfcore/test-datasets](docs/images/test-datasets_logo.png)
+
 Test data to be used for automated testing with the nf-core pipelines
 
 > ⚠️ **Do not merge your test data to `master`! Each pipeline has a dedicated branch (and a special one for modules)**
@@ -13,8 +14,8 @@ The principle for nf-core test data is as small as possible, as large as necessa
 
 nf-core/test-datasets comes with documentation in the `docs/` directory:
 
-01. [Add a new  test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/ADD_NEW_DATA.md)
-02. [Use an existing test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/USE_EXISTING_DATA.md)
+1.  [Add a new test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/ADD_NEW_DATA.md)
+2.  [Use an existing test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/USE_EXISTING_DATA.md)
 
 ## Downloading test data
 

docs/ADD_NEW_DATA.md

@@ -2,13 +2,13 @@
 
 Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested when adding a new test dataset.
 
- - [ ] Check [here](https://github.com/nf-core/test-datasets/branches/all) that there isn't already a branch containing data that could be used
-   - If this is the case, follow the [documentation on how to use an existing test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/USE_EXISTING_DATA.md)
- - [ ] Fork the [nf-core/test-datasets repository](https://github.com/nf-core/test-datasets) to your GitHub account
- - [ ] Create a new branch on your fork
- - [ ] Check your proposed test data follows the [guidelines](https://nf-co.re/docs/contributing/test_data_guidelines)
- - [ ] Add your test dataset
-   - [ ] If you clone it locally use `git clone <url> --branch <branch> --single-branch`
- - [ ] Make a PR on a new branch with a relevant name
- - [ ] Wait for the PR to be merged
- - [ ] Use this newly created branch for your tests
+- [ ] Check [here](https://github.com/nf-core/test-datasets/branches/all) that there isn't already a branch containing data that could be used
+  - If this is the case, follow the [documentation on how to use an existing test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/USE_EXISTING_DATA.md)
+- [ ] Fork the [nf-core/test-datasets repository](https://github.com/nf-core/test-datasets) to your GitHub account
+- [ ] Create a new branch on your fork
+- [ ] Check your proposed test data follows the [guidelines](https://nf-co.re/docs/contributing/test_data_guidelines)
+- [ ] Add your test dataset
+  - [ ] If you clone it locally use `git clone <url> --branch <branch> --single-branch`
+- [ ] Make a PR on a new branch with a relevant name
+- [ ] Wait for the PR to be merged
+- [ ] Use this newly created branch for your tests

docs/USE_EXISTING_DATA.md

@@ -2,10 +2,10 @@
 
 Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested when adding a new test dataset.
 
- - [ ] Check [here](https://github.com/nf-core/test-datasets/branches/all) to find the branch corresponding to the test dataset you want to use (i.e., `modules`, or a given pipeline)
-   - [ ] Alternatively use nf-core tools to search and explore, e.g. `nf-core test-datasets list` (press tab for options), and then `nf-core test-datasets search -b modules fasta` (press tab for options)
-   - [ ] You can also use the flag `--generate-nf-path` to generate config ready strings
- - [ ] Specify in the `conf/test.config` the path to the files from the test dataset 
- - [ ] Set up your CI tests following the nf-core best practices
-   - [ ] For pipelines: [tests/default.nf.test](https://github.com/nf-core/tools/blob/main/nf_core/pipeline-template/tests/default.nf.test))
-   - [ ] For modules: [tests/main.nf.test](https://github.com/nf-core/tools/blob/main/nf_core/module-template/tests/main.nf.test.j2)
+- [ ] Check [here](https://github.com/nf-core/test-datasets/branches/all) to find the branch corresponding to the test dataset you want to use (i.e., `modules`, or a given pipeline)
+  - [ ] Alternatively use nf-core tools to search and explore, e.g. `nf-core test-datasets list` (press tab for options), and then `nf-core test-datasets search -b modules fasta` (press tab for options)
+  - [ ] You can also use the flag `--generate-nf-path` to generate config ready strings
+- [ ] Specify in the `conf/test.config` the path to the files from the test dataset
+- [ ] Set up your CI tests following the nf-core best practices
+  - [ ] For pipelines: [tests/default.nf.test](https://github.com/nf-core/tools/blob/main/nf_core/pipeline-template/tests/default.nf.test))
+  - [ ] For modules: [tests/main.nf.test](https://github.com/nf-core/tools/blob/main/nf_core/module-template/tests/main.nf.test.j2)