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| 1 | +#!/usr/bin/env bash |
| 2 | +set -euo pipefail |
| 3 | + |
| 4 | +# ---------------------------------------- |
| 5 | +# Pretty printing helpers (same style) |
| 6 | +# ---------------------------------------- |
| 7 | + |
| 8 | +function generate_separator { |
| 9 | + local max_len=0 |
| 10 | + for arg in "$@"; do |
| 11 | + ((${#arg} > max_len)) && max_len=${#arg} |
| 12 | + done |
| 13 | + |
| 14 | + local spaces |
| 15 | + printf -v spaces "%${max_len}s" "" |
| 16 | + echo "${spaces// /=}" |
| 17 | +} |
| 18 | + |
| 19 | +function print_separated_message { |
| 20 | + local sep |
| 21 | + sep=$(generate_separator "$@") |
| 22 | + |
| 23 | + echo "$sep" |
| 24 | + for line in "$@"; do |
| 25 | + echo "$line" |
| 26 | + done |
| 27 | + echo "$sep" |
| 28 | +} |
| 29 | + |
| 30 | +function die { |
| 31 | + echo "ERROR: $*" >&2 |
| 32 | + exit 1 |
| 33 | +} |
| 34 | + |
| 35 | +function step { |
| 36 | + # Usage: step "1/7" "Message" |
| 37 | + print_separated_message "[${1}] ${2}" |
| 38 | +} |
| 39 | + |
| 40 | +# ---------------------------------------- |
| 41 | +# Static settings (change only if needed) |
| 42 | +# ---------------------------------------- |
| 43 | + |
| 44 | +ENV_NAME="NSDF-Tutorial" |
| 45 | +KERNEL_NAME="nsdf-tutorial" |
| 46 | +KERNEL_DISPLAY='Python (NSDF-Tutorial)' |
| 47 | + |
| 48 | +# ---------------------------------------- |
| 49 | +# Derived paths |
| 50 | +# ---------------------------------------- |
| 51 | + |
| 52 | +SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" |
| 53 | +cd "$SCRIPT_DIR" |
| 54 | + |
| 55 | +# ---------------------------------------- |
| 56 | +# 0) Ensure conda is available |
| 57 | +# ---------------------------------------- |
| 58 | + |
| 59 | +step "0/7" "Checking conda availability" |
| 60 | + |
| 61 | +if command -v module >/dev/null 2>&1; then |
| 62 | + # Jetstream module environment |
| 63 | + module purge >/dev/null 2>&1 || true |
| 64 | + module load miniforge >/dev/null 2>&1 || true |
| 65 | +fi |
| 66 | + |
| 67 | +command -v conda >/dev/null 2>&1 || die "conda not found. Did you 'module load miniforge'?" |
| 68 | + |
| 69 | +# Make conda activate work in scripts |
| 70 | +# shellcheck disable=SC1090 |
| 71 | +source "$(conda info --base)/etc/profile.d/conda.sh" |
| 72 | + |
| 73 | +# ---------------------------------------- |
| 74 | +# 1) Create env from environment.yml (replace if exists) |
| 75 | +# ---------------------------------------- |
| 76 | + |
| 77 | +step "1/7" "Create env from environment.yml (name: ${ENV_NAME})" |
| 78 | + |
| 79 | +if conda env list | awk '{print $1}' | grep -qx "$ENV_NAME"; then |
| 80 | + echo "Removing existing env: ${ENV_NAME}" |
| 81 | + conda env remove -n "$ENV_NAME" -y >/dev/null |
| 82 | +fi |
| 83 | + |
| 84 | +conda env create -f environment.yml >/dev/null |
| 85 | + |
| 86 | +# ---------------------------------------- |
| 87 | +# 2) Activate environment |
| 88 | +# ---------------------------------------- |
| 89 | + |
| 90 | +step "2/7" "Activate env: ${ENV_NAME}" |
| 91 | + |
| 92 | +conda activate "$ENV_NAME" |
| 93 | +hash -r |
| 94 | + |
| 95 | +# ---------------------------------------- |
| 96 | +# 3) Verify activation (hard fail if wrong) |
| 97 | +# ---------------------------------------- |
| 98 | + |
| 99 | +step "3/7" "Verify activation" |
| 100 | + |
| 101 | +python - <<PY |
| 102 | +import os, sys |
| 103 | +env = os.environ.get("CONDA_DEFAULT_ENV") |
| 104 | +prefix = os.environ.get("CONDA_PREFIX") |
| 105 | +print("CONDA_DEFAULT_ENV:", env) |
| 106 | +print("CONDA_PREFIX:", prefix) |
| 107 | +print("sys.executable:", sys.executable) |
| 108 | +if env != "$ENV_NAME": |
| 109 | + raise SystemExit(f"ERROR: expected CONDA_DEFAULT_ENV=$ENV_NAME but got {env}") |
| 110 | +PY |
| 111 | + |
| 112 | +# ---------------------------------------- |
| 113 | +# 4) Install GEOtiled/geotiled editable |
| 114 | +# ---------------------------------------- |
| 115 | + |
| 116 | +step "4/7" "Install GEOtiled/geotiled editable" |
| 117 | + |
| 118 | +GEOTILED_DIR="$SCRIPT_DIR/GEOtiled/geotiled" |
| 119 | +[[ -d "$GEOTILED_DIR" ]] || die "GEOtiled/geotiled dir not found: $GEOTILED_DIR" |
| 120 | + |
| 121 | +python -m pip install -e "$GEOTILED_DIR" >/dev/null |
| 122 | + |
| 123 | +# ---------------------------------------- |
| 124 | +# 5) Configure Openvisuspy environment variables |
| 125 | +# ---------------------------------------- |
| 126 | + |
| 127 | +step "5/7" "Configure Openvisuspy env vars (~/.bashrc)" |
| 128 | + |
| 129 | +OPENVISUSPY_SRC="$SCRIPT_DIR/openvisuspy/src" |
| 130 | +[[ -d "$OPENVISUSPY_SRC" ]] || die "openvisuspy/src not found: $OPENVISUSPY_SRC" |
| 131 | + |
| 132 | +# Append only if not already present (idempotent-ish) |
| 133 | +append_if_missing () { |
| 134 | + local line="$1" |
| 135 | + local file="$2" |
| 136 | + grep -Fqx "$line" "$file" 2>/dev/null || echo "$line" >> "$file" |
| 137 | +} |
| 138 | + |
| 139 | +BASHRC="$HOME/.bashrc" |
| 140 | + |
| 141 | +append_if_missing "export PATH=\"\$PATH:${OPENVISUSPY_SRC}\"" "$BASHRC" |
| 142 | +append_if_missing "export PYTHONPATH=\"\$PYTHONPATH:${OPENVISUSPY_SRC}\"" "$BASHRC" |
| 143 | +append_if_missing "export BOKEH_ALLOW_WS_ORIGIN='*'" "$BASHRC" |
| 144 | +append_if_missing "export BOKEH_RESOURCES='cdn'" "$BASHRC" |
| 145 | +append_if_missing "export VISUS_CACHE=/tmp/visus-cache/nsdf-services/somospie" "$BASHRC" |
| 146 | +append_if_missing "export VISUS_CPP_VERBOSE=1" "$BASHRC" |
| 147 | +append_if_missing "export VISUS_NETSERVICE_VERBOSE=1" "$BASHRC" |
| 148 | +append_if_missing "export VISUS_VERBOSE_DISKACCESS=1" "$BASHRC" |
| 149 | + |
| 150 | +# Load into current shell too |
| 151 | +# shellcheck disable=SC1090 |
| 152 | +source "$BASHRC" |
| 153 | + |
| 154 | +# ---------------------------------------- |
| 155 | +# 6) Install openvisuspy editable |
| 156 | +# ---------------------------------------- |
| 157 | + |
| 158 | +step "6/7" "Install openvisuspy editable" |
| 159 | + |
| 160 | +OPENVISUSPY_DIR="$SCRIPT_DIR/openvisuspy" |
| 161 | +[[ -d "$OPENVISUSPY_DIR" ]] || die "openvisuspy dir not found: $OPENVISUSPY_DIR" |
| 162 | + |
| 163 | +python -m pip install -e "$OPENVISUSPY_DIR" >/dev/null |
| 164 | + |
| 165 | +# ---------------------------------------- |
| 166 | +# 7) Install ipykernel + register kernel |
| 167 | +# ---------------------------------------- |
| 168 | + |
| 169 | +step "7/7" "Install Jupyter kernel + extras" |
| 170 | + |
| 171 | +# keep these visible enough to diagnose, but not too noisy |
| 172 | +ENV_BIN_DIR="$CONDA_PREFIX/bin" |
| 173 | + |
| 174 | +python -m ipykernel install --user \ |
| 175 | + --name "$KERNEL_NAME" \ |
| 176 | + --display-name "$KERNEL_DISPLAY" \ |
| 177 | + --env PATH "$ENV_BIN_DIR:$OPENVISUSPY_SRC:$PATH" \ |
| 178 | + --env LD_LIBRARY_PATH "$CONDA_PREFIX/lib:$CONDA_PREFIX/lib/gdalplugins" \ |
| 179 | + --env PROJ_LIB "$CONDA_PREFIX/share/proj" \ |
| 180 | + --env GDAL_DATA "$CONDA_PREFIX/share/gdal" \ |
| 181 | + --env PROJ_NETWORK "ON" |
| 182 | + |
| 183 | +print_separated_message \ |
| 184 | + "DONE" \ |
| 185 | + "" \ |
| 186 | + "Environment:" \ |
| 187 | + " conda activate ${ENV_NAME}" \ |
| 188 | + "" \ |
| 189 | + "Kernel:" \ |
| 190 | + " jupyter kernelspec list" \ |
| 191 | + " (look for '${KERNEL_DISPLAY}')" |
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