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<!DOCTYPE html>
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<div class="tl-item pub-item with-thumb"><span class="item-section">2023</span>
<div class="content-wrapper">
<h3 class="title"><a href="#"
target="https://kisaacs.github.io/papers/brink_thicket_hpdc2023.pdf">Thicket: Seeing the
Performance Experiment Forest for
the Individual Run Trees</a></h3>
<div class="description">
<div class="citation"><span>High-Performance Parallel and Distributed Computing (HPDC 2023).<span
class="block-elem">Stephanie Brink, Michael McKinsey, David Boehme, Connor
Scully-Allison, Ian Lumsden, Daryl Hawkins, Treece Burgess, Vanessa Lama, Jakob Luettgau,
Katherine E Isaacs, <b>Michela Taufer</b>, Olga Pearce </span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{brink2023thicket,<br>
title={Thicket: Seeing the Performance Experiment Forest for the Individual Run Trees},<br>
author={Brink, Stephanie and McKinsey, Michael and Boehme, David and Scully-Allison, Connor and
Lumsden, Ian and Hawkins, Daryl and Burgess, Treece and Lama, Vanessa and Luettgau, Jakob and
Isaacs, Katherine E and others},<br>
journal={High-Performance Parallel and Distributed Computing (HPDC 2023)},<br>
volume={6},<br>
number={7},<br>
pages={23},<br>
year={2023}<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://ieeexplore.ieee.org/abstract/document/10040660"
target="_blank">Reproducibility of the first image of a black hole in the galaxy M87 from the
event horizon telescope (EHT) collaboration</a></h3>
<div class="description">
<div class="citation"><span>Computing in Science & Engineering<span class="block-elem">Ria Patel,
Brandan Roachell, Silvina Caino-Lores, Ross Ketron, Jacob Leonard, Nigel Tan, Karan Vahi,
Duncan A Brown, Ewa Deelman, <b>Michela Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{patel2023reproducibility,<br>
title={Reproducibility of the first image of a black hole in the galaxy M87 from the event
horizon telescope (EHT) collaboration},<br>
author={Patel, Ria and Roachell, Brandan and Caino-Lores, Silvina and Ketron, Ross and Leonard,
Jacob and Tan, Nigel and Vahi, Karan and Brown, Duncan A and Deelman, Ewa and Taufer,
Michela},<br>
journal={Computing in Science \& Engineering},<br>
year={2023},<br>
publisher=IEEE<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://arxiv.org/abs/2304.01035" target="_blank">Reproducing the results
for NICER observation of PSR J0030+ 0451</a></h3>
<div class="description">
<div class="citation"><span>arXiv preprint arXiv:2304.01035<span class="block-elem">Chaitanya
Afle, Patrick R Miles, Silvina Caino-Lores, Collin D Capano, Ingo Tews, Karan Vahi, Ewa
Deelman, <b>Michela Taufer</b>, Duncan A Brown</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{afle2023reproducing,<br>
title={Reproducing the results for NICER observation of PSR J0030+ 0451},<br>
author={Afle, Chaitanya and Miles, Patrick R and Caino-Lores, Silvina and Capano, Collin D and
Tews, Ingo and Vahi, Karan and Deelman, Ewa and Taufer, Michela and Brown, Duncan A},<br>
journal={arXiv preprint arXiv:2304.01035},<br>
year=2023<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://journals.sagepub.com/doi/abs/10.1177/10943420231166610"
target="_blank">A Survey of Graph Comparison Methods with Applications to Nondeterminism in
High-Performance Computing</a></h3>
<div class="description">
<div class="citation"><span>The International Journal of High Performance Computing
Applications<span class="block-elem">Sanjukta Bhowmick, Patrick Bell, <b>Michela
Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{bhowmick2023survey,<br>
title={A Survey of Graph Comparison Methods with Applications to Nondeterminism in
High-Performance Computing},<br>
author={Bhowmick, Sanjukta and Bell, Patrick and Taufer, Michela},<br>
journal={The International Journal of High Performance Computing Applications},<br>
pages={10943420231166610},<br>
year={2023},<br>
publisher={SAGE Publications Sage UK: London, England}<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://journals.sagepub.com/doi/abs/10.1177/10943420231167800"
target="_blank">Orchestration of materials science workflows for heterogeneous resources at
large scale</a></h3>
<div class="description">
<div class="citation"><span>The International Journal of High Performance Computing
Applications<span class="block-elem">Naweiluo Zhou, Giorgio Scorzelli, Jakob Luettgau, Rahul R
Kancharla, Joshua J Kane, Robert Wheeler, Brendan P Croom, Pania Newell, Valerio Pascucci,
<b>Michela Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{zhou2023orchestration,<br>
title={Orchestration of materials science workflows for heterogeneous resources at large
scale},<br>
author={Zhou, Naweiluo and Scorzelli, Giorgio and Luettgau, Jakob and Kancharla, Rahul R and
Kane, Joshua J and Wheeler, Robert and Croom, Brendan P and Newell, Pania and Pascucci, Valerio
and Taufer, Michela},<br>
journal={The International Journal of High Performance Computing Applications},<br>
pages={10943420231167800},<br>
year={2023},<br>
publisher={SAGE Publications Sage UK: London, England} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://dl.acm.org/doi/abs/10.1145/3592979.3593420"
target="_blank">Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and
Annotation of Collective Variables</a></h3>
<div class="description">
<div class="citation"><span>The International Journal of High Performance Computing
Applications<span class="block-elem">Silvina Caino-Lores, Michel Cuendet, Jack Marquez,
Ekaterina Kots, Trilce Estrada, Ewa Deelman, Harel Weinstein,
<b>Michela Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{caino2023runtime,<br>
title={Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and
Annotation of Collective Variables},<br>
author={Caino-Lores, Silvina and Cuendet, Michel and Marquez, Jack and Kots, Ekaterina and
Estrada, Trilce and Deelman, Ewa and Weinstein, Harel and Taufer, Michela},<br>
booktitle={Proceedings of the Platform for Advanced Scientific Computing Conference},<br>
pages={1--11},<br>
year={2023} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://ieeexplore.ieee.org/abstract/document/10255013"
target="_blank">Enabling Scalability in the Cloud for Scientific Workflows: An Earth Science Use
Case</a></h3>
<div class="description">
<div class="citation"><span>2023 IEEE 16th International Conference on Cloud Computing
(CLOUD)<span class="block-elem">Paula Olaya, Jakob Luettgau, Camila Roa, Ricardo Llamas,
Rodrigo Vargas, Sophia Wen, I-Hsin Chung, Seetharami Seelam, Yoonho Park, Jay Lofstead,
<b>Michela Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{olaya2023enabling,<br>
title={Enabling Scalability in the Cloud for Scientific Workflows: An Earth Science Use
Case},<br>
author={Olaya, Paula and Luettgau, Jakob and Roa, Camila and Llamas, Ricardo and Vargas, Rodrigo
and Wen, Sophia and Chung, I-Hsin and Seelam, Seetharami and Park, Yoonho and Lofstead, Jay and
others},<br>
booktitle={2023 IEEE 16th International Conference on Cloud Computing (CLOUD)},<br>
pages={383--393},<br>
year={2023},<br>
organization={IEEE} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://link.springer.com/chapter/10.1007/978-3-031-34668-2_25"
target="_blank">Development of Large-Scale Scientific Cyberinfrastructure and the Growing
Opportunity to Democratize Access to Platforms and Data</a></h3>
<div class="description">
<div class="citation"><span>International Conference on Human-Computer Interaction<span
class="block-elem">Jakob Luettgau, Giorgio Scorzelli, Valerio Pascucci,
<b>Michela Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{luettgau2023development,<br>
title={Development of Large-Scale Scientific Cyberinfrastructure and the Growing Opportunity to
Democratize Access to Platforms and Data},<br>
author={Luettgau, Jakob and Scorzelli, Giorgio and Pascucci, Valerio and Taufer, Michela},<br>
booktitle={International Conference on Human-Computer Interaction},<br>
pages={378--389},<br>
year={2023},<br>
organization={Springer} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://dl.acm.org/doi/abs/10.1145/3605573.3605639"
target="_blank">Scalable Incremental Checkpointing using GPU-Accelerated De-Duplication</a></h3>
<div class="description">
<div class="citation"><span>Proceedings of the 52nd International Conference on Parallel
Processing<span class="block-elem">Nigel Tan, Jakob Luettgau, Jack Marquez, Keita Teranishi,
Nicolas Morales, Sanjukta Bhowmick, Franck Cappello, <b>Michela Taufer</b>, Bogdan
Nicolae</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{tan2023scalable,<br>
title={Scalable Incremental Checkpointing using GPU-Accelerated De-Duplication},<br>
author={Tan, Nigel and Luettgau, Jakob and Marquez, Jack and Teranishi, Keita and Morales,
Nicolas and Bhowmick, Sanjukta and Cappello, Franck and Taufer, Michela and Nicolae,
Bogdan},<br>
booktitle={Proceedings of the 52nd International Conference on Parallel Processing},<br>
pages={665--674},<br>
year={2023} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://dl.acm.org/doi/abs/10.1145/3588195.3595941"
target="_blank">GEOtiled: A Scalable Workflow for Generating Large Datasets of High-Resolution
Terrain Parameters</a></h3>
<div class="description">
<div class="citation"><span>Proceedings of the 32nd International Symposium on High-Performance
Parallel and Distributed Computing<span class="block-elem">Camila Roa, Paula Olaya, Ricardo
Llamas, Rodrigo Vargas, <b>Michela Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{roa2023geotiled,<br>
title={GEOtiled: A Scalable Workflow for Generating Large Datasets of High-Resolution Terrain
Parameters},<br>
author={Roa, Camila and Olaya, Paula and Llamas, Ricardo and Vargas, Rodrigo and Taufer,
Michela},<br>
booktitle={Proceedings of the 32nd International Symposium on High-Performance Parallel and
Distributed Computing},<br>
pages={311--312},<br>
year={2023} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://dl.acm.org/doi/abs/10.1145/3588195.3595948"
target="_blank">Studying Latency and Throughput Constraints for Geo-Distributed Data in the
National Science Data Fabric</a></h3>
<div class="description">
<div class="citation"><span>Proceedings of the 32nd International Symposium on High-Performance
Parallel and Distributed Computing<span class="block-elem">Jakob Luettgau, Heberth Martinez,
Glenn Tarcea, Giorgio Scorzelli, Valerio Pascucci, <b>Michela Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{luettgau2023studying,<br>
title={Studying Latency and Throughput Constraints for Geo-Distributed Data in the National
Science Data Fabric},<br>
author={Luettgau, Jakob and Martinez, Heberth and Tarcea, Glenn and Scorzelli, Giorgio and
Pascucci, Valerio and Taufer, Michela},<br>
booktitle={Proceedings of the 32nd International Symposium on High-Performance Parallel and
Distributed Computing},<br>
pages={325--326},<br>
year={2023} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://dl.acm.org/doi/abs/10.1145/3605573.3605636"
target="_blank">Composable Workflow for Accelerating Neural Architecture Search Using In Situ
Analytics for Protein Classification</a></h3>
<div class="description">
<div class="citation"><span>Proceedings of the 52nd International Conference on Parallel
Processing<span class="block-elem">Georgia Channing, Ria Patel, Paula Olaya, Ariel Rorabaugh,
Osamu Miyashita, Silvina Caino-Lores, Catherine Schuman, Florence Tama, <b>Michela
Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{channing2023composable,<br>
title={Composable Workflow for Accelerating Neural Architecture Search Using In Situ Analytics
for Protein Classification},<br>
author={Channing, Georgia and Patel, Ria and Olaya, Paula and Rorabaugh, Ariel and Miyashita,
Osamu and Caino-Lores, Silvina and Schuman, Catherine and Tama, Florence and Taufer,
Michela},<br>
booktitle={Proceedings of the 52nd International Conference on Parallel Processing},<br>
pages={1--1},<br>
year={2023} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/cpe.7111"
target="_blank">Performance assessment of ensembles of in situ workflows under resource
constraints</a></h3>
<div class="description">
<div class="citation"><span>Concurrency and Computation: Practice and Experience<span
class="block-elem">Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina
Caíno‐Lores, <b>Michela Taufer</b>, Ewa Deelman</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{do2023performance,<br>
title={Performance assessment of ensembles of in situ workflows under resource constraints},<br>
author={Do, Tu Mai Anh and Pottier, Lo{\"\i}c and Ferreira da Silva, Rafael and
Ca{\'\i}no-Lores, Silvina and Taufer, Michela and Deelman, Ewa},<br>
journal={Concurrency and Computation: Practice and Experience},<br>
volume={35},<br>
number={20},<br>
pages={e7111},<br>
year={2023},<br>
publisher={Wiley Online Library} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://ieeexplore.ieee.org/abstract/document/10254895"
target="_blank">Online Boosted Gaussian Learners for In-Situ Detection and Characterization of
Protein Folding States in Molecular Dynamics Simulations</a></h3>
<div class="description">
<div class="citation"><span>2023 IEEE 19th International Conference on e-Science (e-Science)<span
class="block-elem">Harshita Sahni, Hector Carrillo-Cabada, Ekaterina Kots, Silvina
Caino-Lores, Jack Marquez, Ewa Deelman, Michel Cuendet, Harel Weinstein, <b>Michela
Taufer</b>, Trilce Estrada</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@inproceedings{sahni2023online,<br>
title={Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein
Folding States in Molecular Dynamics Simulations},<br>
author={Sahni, Harshita and Carrillo-Cabada, Hector and Kots, Ekaterina and Caino-Lores, Silvina
and Marquez, Jack and Deelman, Ewa and Cuendet, Michel and Weinstein, Harel and Taufer, Michela
and Estrada, Trilce},<br>
booktitle={2023 IEEE 19th International Conference on e-Science (e-Science)},<br>
pages={1--10},<br>
year={2023},<br>
organization={IEEE} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://dl.acm.org/doi/abs/10.1016/j.future.2023.02.027"
target="_blank">Recognition of Outstanding Future Generation Computer Systems Reviewers for
2022</a></h3>
<div class="description">
<div class="citation"><span>Future Generation Computer Systems<span class="block-elem"> <b>Michela
Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@misc{taufer2023recognition,<br>
title={Recognition of Outstanding Future Generation Computer Systems Reviewers for 2022},<br>
author={Taufer, Michela},<br>
year={2023} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://ieeexplore.ieee.org/abstract/document/9942337"
target="_blank">Building Trust in Earth Science Findings through Data Traceability and Results
Explainability</a></h3>
<div class="description">
<div class="citation"><span>IEEE Transactions on Parallel and Distributed Systems<span
class="block-elem"> P Olaya, D Kennedy, R Llamas, L Valera, R Vargas, J Lofstead, <b>M
Taufer</b></span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{olaya2022building,<br>
title={Building trust in earth science findings through data traceability and results
explainability},<br>
author={Olaya, Paula and Kennedy, Dominic and Llamas, Ricardo and Valera, Leobardo and Vargas,
Rodrigo and Lofstead, Jay and Taufer, Michela},<br>
journal={IEEE Transactions on Parallel and Distributed Systems},<br>
volume={34},<br>
number={2},<br>
pages={704--717},<br>
year={2022},<br>
publisher={IEEE} <br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb"><span class="item-section">2022</span>
<div class="content-wrapper">
<h3 class="title"><a href="#" target="_blank">Performance Assessment of Ensembles of In Situ
Workflows under Resource Constraints</a></h3>
<div class="description">
<div class="citation"><span>Journal of Concurrency and Computation: Practice and Experience
(CCPE), 2022.<span class="block-elem">Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva,
Silvina Caíno-Lores, <b>Michela Taufer</b>, and Ewa Deelman</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@ARTICLE{elsevier-ccpe-tu-2022,<br>
author = {Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina Caíno-Lores, and
Michela Taufer and Ewa Deelman},<br>
journal = {{Journal of Concurrency and Computation: Practice and Experience (CCPE)}},<br>
title = {{Performance Assessment of Ensembles of In Situ Workflows under Resource
Constraints}},<br>
year = {2022},<br>
volume = {},<br>
number = {},<br>
pages = {},<br>
note = {{\it (Accepted)}},<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://journals.asm.org/doi/full/10.1128/msystems.00312-22"
target="_blank">Apex Predator Nematodes and Meso-Predator Bacteria Consume Their Basal Insect
Prey through Discrete Stages of Chemical Transformations (open access)</a></h3>
<div class="description">
<div class="citation"><span>mSystems, 2022.<span class="block-elem">Nicholas C. Mucci, Katarina A.
Jones, Mengyi Cao, Michael R. Wyatt, Shane Foye, Sarah J. Kauffman, Gregory R. Richards,
<b>Michela Taufer</b>, Yoshito Chikaraishi, Shawn A. Steffan, Shawn R. Campagna, Heidi
Goodrich-Blair, and Christopher R. Anderton.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{doi:10.1128/msystems.00312-22,<br>
author = {Nicholas C. Mucci and Katarina A. Jones and Mengyi Cao and Michael R. Wyatt and Shane
Foye and Sarah J. Kauffman and Gregory R. Richards and Michela Taufer and Yoshito Chikaraishi
and Shawn A. Steffan and Shawn R. Campagna and Heidi Goodrich-Blair and Christopher R. Anderton
},<br>
title = {{Apex Predator Nematodes and Meso-Predator Bacteria Consume Their Basal Insect Prey
through Discrete Stages of Chemical Transformations}},<br>
journal = {{mSystems}},<br>
volume = {0},<br>
number = {0},<br>
pages = {e00312-22},<br>
year = {2022},<br>
doi = {10.1128/msystems.00312-22},<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://journals.sagepub.com/doi/abs/10.1177/10943420221079765"
target="_blank">AI4IO: A Suite of AI-Based Tools for IO-Aware Scheduling</a></h3>
<div class="description">
<div class="citation"><span>International Journal of High Performance Computing Applications
(IJHPCA), 2022.<span class="block-elem">Michael R. Wyatt II+, and Stephen Herbein, and Todd
Gamblin, and <b>Michela Taufer</b>.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@ARTICLE{sage-ijhpca-wyatt-2022,<br>
author = {Michael R. Wyatt II+, and Stephen Herbein, and Todd Gamblin, and Michela Taufer},<br>
journal = {{International Journal of High Performance Computing Applications (IJHPCA)}},<br>
title = {{AI4IO: A Suite of AI-Based Tools for IO-Aware Scheduling}},<br>
year = {2022},<br>
volume = {36},<br>
number = {3},<br>
pages = {370-387},<br>
doi = {10.1177/10943420221079765},<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://www.sciencedirect.com/science/article/pii/S2352340921010544"
target="_blank">High Frequency Accuracy and Loss Data of Random Neural Networks Trained on Image
Datasets (open access)</a></h3>
<div class="description">
<div class="citation"><span>Data in Brief, Elsevier, 2022.<span class="block-elem">A. Keller
Rorabaugh, S. Caíno-Lores, T. Johnston, and <b>M. Taufer</b>.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{rorabaugh2022highfrequency,<br>
author = {Ariel Keller Rorabaugh and Silvina Caíno-Lores and Travis Johnston and Michela
Taufer},<br>
title = {{High frequency accuracy and loss data of random neural networks trained on image
datasets}},<br>
journal = {Data in Brief},<br>
volume = {40},<br>
pages = {107780},<br>
year = {2022},<br>
issn = {2352-3409},<br>
doi = {10.1016/j.dib.2021.107780},<br>
url = {https://doi.org/10.1016/j.dib.2021.107780},<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://ieeexplore.ieee.org/document/9674227" target="_blank">Building
High-throughput Neural Architecture Search Workflows via a Decoupled Fitness Prediction Engine
(open access)</a></h3>
<div class="description">
<div class="citation"><span> IEEE Transactions on Parallel and Distributed Systems (TPDS), 2022.
<span class="block-elem">A. Keller Rorabaugh, S. Caíno-Lores, T. Johnston, and <b>M.
Taufer</b>.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@ARTICLE{9674227,<br>
author={Keller Rorabaugh, Ariel and Caíno-Lores, Silvina and Johnston, Travis and Taufer,
Michela},<br>
journal={{IEEE Transactions on Parallel and Distributed Systems}}, <br>
title={{Building High-Throughput Neural Architecture Search Workflows via a Decoupled Fitness
Prediction Engine}}, <br>
year={2022},<br>
volume={33},<br>
number={11},<br>
pages={2913-2926},<br>
doi={10.1109/TPDS.2022.3140681}}<br>
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://journals.sagepub.com/doi/abs/10.1177/10943420211051039"
target="_blank">An Analytical Performance Model of Generalized Multi-Level Scheduling</a></h3>
<div class="description">
<div class="citation"><span> International Journal of High Performance Computing Applications
(IJHPCA), 2022.<span class="block-elem">S. Herbein, T. Patki, D. H. Ahn, S. Mobo, C. Hathaway,
S. Caíno-Lores, J. Corbett, D. Domyancic, T. R. W. Scogland, B. R. de Supinski, and <b>M.
Taufer</b>.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@ARTICLE{sage-ijhpca-herbein-2022,<br>
author = {S. Herbein and T. Patki and D. H. Ahn and S. Mobo and C. Hathaway and S. Caíno-Lores
and J. Corbett and D. Domyancic and T. R. W. Scogland and B. R. de Supinski and M. Taufer},<br>
journal = {{International Journal of High Performance Computing Applications (IJHPCA)}},<br>
title = {{An Analytical Performance Model of Generalized Multi-Level Scheduling}},<br>
year = {2022},<br>
volume = {36},<br>
number = {3},<br>
pages = {289-306},<br>
doi = {10.1177/10943420211051039},<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://www.computer.org/csdl/journal/td/2022/04/09444146/1tYo1E5UJz2"
target="_blank">VPIC 2.0: Next Generation Particle-in-Cell Simulations (open access)</a></h3>
<div class="description">
<div class="citation"><span> IEEE Transactions on Parallel and Distributed Systems (TPDS), 2022.
<span class="block-elem">R. F. Bird, N. Tan, S. V. Luedtke, S. L. Harrell, <b>M. Taufer</b>,
and B. J. Albright.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@ARTICLE {bird2022vpic,<br>
author = {R. Bird and N. Tan and S. V. Luedtke and S. Harrell and M. Taufer and B.
Albright},<br>
journal = {{IEEE Transactions on Parallel & Distributed Systems}},<br>
title = {{VPIC 2.0: Next Generation Particle-in-Cell Simulations}},<br>
year = {2022},<br>
volume = {33},<br>
number = {04},<br>
issn = {1558-2183},<br>
pages = {952-963},<br>
doi = {10.1109/TPDS.2021.3084795},<br>
publisher = {IEEE Computer Society},<br>
month = {apr}<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb"><span class="item-section">2021</span>
<div class="content-wrapper">
<h3 class="title"><a href="https://www.sciencedirect.com/science/article/pii/S2665963821000634"
target="_blank">ANACIN-X: A Software Framework for Studying Non-Determinism in MPI Applications
(open access)</a></h3>
<div class="description">
<div class="citation"><span> Software Impacts, Elsevier, 2021. <span class="block-elem">P. Bell,
K. Suarez, D. Chapp, N. Tan, S. Bhowmick, and <b>M. Taufer</b>.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{bell2021anacinx,<br>
author = {Patrick Bell and Kae Suarez and Dylan Chapp and Nigel Tan and Sanjukta Bhowmick and
Michela Taufer},<br>
title = {{ANACIN-X: A software framework for studying non-determinism in MPI applications}},<br>
journal = {Software Impacts},<br>
volume = {10},<br>
pages = {100151},<br>
year = {2021},<br>
issn = {2665-9638},<br>
doi = {10.1016/j.simpa.2021.100151},<br>
url = {https://doi.org/10.1016/j.simpa.2021.100151},<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://ieeexplore.ieee.org/document/9353979" target="_blank">Reproducing
GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger</a></h3>
<div class="description">
<div class="citation"><span> IEEE Computing in Science and Engineering (CiSE), 2021. <span
class="block-elem"> D. A. Brown, K. Vahi, <b>M. Taufer</b>, V. Welch, E. Deelman, L. A.
Barba, and G. K. Thiruvathukal.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@ARTICLE {brown2021reproducing,<br>
author = {D. A. Brown and K. Vahi and M. Taufer and V. Welch and E. Deelman},<br>
journal = {{Computing in Science & Engineering}},<br>
title = {{Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black
Hole Merger}},<br>
year = {2021},<br>
volume = {23},<br>
number = {02},<br>
issn = {1558-366X},<br>
pages = {73-82},<br>
doi = {10.1109/MCSE.2021.3059232},<br>
publisher = {IEEE Computer Society},<br>
month = {mar}<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://www.sciencedirect.com/science/article/abs/pii/S1877750320305573"
target="_blank">A Lightweight Method for Evaluating in situ Workflow Efficiency</a></h3>
<div class="description">
<div class="citation"><span> Journal of Computational Science, 2021. <span class="block-elem">T.
M. A. Do, L. Pottier, S. Caíno-Lores, R. Ferreira da Silva, M. A. Cuendet, H. Weinstein, T.
Estrada, <b>M. Taufer</b>, and Ewa Deelman.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@article{do2021lightweight,<br>
title={{A lightweight method for evaluating in situ workflow efficiency}},<br>
author={Tu Mai Anh Do and Lo{\"i}c Pottier and Silvina Ca{\'i}no-Lores and Rafael Ferreira da
Silva and Michel A. Cuendet and Harel Weinstein and Trilce Estrada and Michela Taufer and Ewa
Deelman},<br>
journal={{J. Comput. Sci.}},<br>
year={2021},<br>
volume={48},<br>
pages={101259}<br>
}
</p>
</div>
</div>
</div>
<div class="tl-item pub-item with-thumb">
<div class="content-wrapper">
<h3 class="title"><a href="https://ieeexplore.ieee.org/document/8859247" target="_blank">A Graphic
Encoding Method for Quantitative Classification of Protein Structure and Representation of
Conformational Changes</a></h3>
<div class="description">
<div class="citation"><span> IEEE/ACM Transactions on Computational Biology and Bioinformatics,
2021. <span class="block-elem">H. Carrillo-Cabada, J. Benson, A. M. Razavi, B. Mulligan, M. A.
Cuendet, H. Weinstein, <b>M. Taufer</b>, and Trilce Estrada.</span></span></div>
</div>
<button class="accordion">[Bibtex]</button>
<div class="panel">
<p>
@ARTICLE {carrillocabada2021graphic,<br>
author = {H. Carrillo-Cabada and J. Benson and A. M. Razavi and B. Mulligan and M. A. Cuendet
and H. Weinstein and M. Taufer and T. Estrada},<br>
journal = {{IEEE/ACM Transactions on Computational Biology and Bioinformatics}},<br>
title = {{A Graphic Encoding Method for Quantitative Classification of Protein Structure and
Representation of Conformational Changes}},<br>
year = {2021},<br>
volume = {18},<br>
number = {04},<br>
issn = {1557-9964},<br>
pages = {1336-1349},<br>